Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ARPC3P2-201ENST00000457786 533 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 KCTD9P5-201ENST00000504141 1170 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.36□□□□□ -1.87
CLDN3O15551 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.36□□□□□ -1.87
CLDN3O15551 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CLDN3O15551 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.36□□□□□ -1.87
CLDN3O15551 AP002404.1-201ENST00000532005 451 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC087897.1-201ENST00000550134 156 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.36□□□□□ -1.87
CLDN3O15551 OR4T1P-201ENST00000554933 911 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 MIR5708-201ENST00000579723 85 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.36□□□□□ -1.87
CLDN3O15551 MIR4325-201ENST00000583049 90 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.36□□□□□ -1.87
CLDN3O15551 AC008962.1-201ENST00000605729 304 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC016877.3-201ENST00000606778 504 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC124016.2-201ENST00000610058 665 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AL450489.1-201ENST00000612071 468 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AL162274.2-201ENST00000614406 332 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 AC091953.5-201ENST00000622919 233 ntBASIC3.36□□□□□ -1.87
CLDN3O15551 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.36□□□□□ -1.87
CLDN3O15551 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.36□□□□□ -1.87
CLDN3O15551 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.36□□□□□ -1.87
CLDN3O15551 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.36□□□□□ -1.87
CLDN3O15551 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.35□□□□□ -1.87
CLDN3O15551 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CLDN3O15551 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CLDN3O15551 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CLDN3O15551 MIR22-201ENST00000362190 85 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 RNU6-707P-201ENST00000364647 95 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.35□□□□□ -1.87
CLDN3O15551 SNORD51-201ENST00000384320 80 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 SNORA48.5-201ENST00000391143 135 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL138885.1-201ENST00000405921 675 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 RPS12P18-201ENST00000442381 270 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL445669.2-201ENST00000454425 421 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CLDN3O15551 KLRA1P-201ENST00000503499 986 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC010460.2-201ENST00000509054 677 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 AC010625.1-201ENST00000511296 403 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 RNA5SP341-201ENST00000516261 117 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 RN7SKP272-201ENST00000516988 232 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC245166.1-201ENST00000521012 253 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 MTND1P36-201ENST00000522384 936 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 NDUFS5P6-201ENST00000529136 295 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL391156.1-201ENST00000554965 554 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.35□□□□□ -1.87
CLDN3O15551 AC126365.2-201ENST00000580630 379 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.35□□□□□ -1.87
CLDN3O15551 AC068620.3-201ENST00000602749 560 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL035411.2-201ENST00000604022 421 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AC106028.5-201ENST00000610332 395 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL157770.1-201ENST00000623049 439 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AP003476.1-201ENST00000623984 516 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL353743.1-202ENST00000431724 1695 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL136520.1-201ENST00000600311 1322 ntBASIC3.35□□□□□ -1.87
CLDN3O15551 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.35□□□□□ -1.87
CLDN3O15551 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.34□□□□□ -1.87
CLDN3O15551 SNORA71.1-201ENST00000364523 117 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 RNU6-878P-201ENST00000384578 110 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 RPS7P9-201ENST00000414704 586 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AL589880.1-201ENST00000448271 287 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 HMGN2P13-201ENST00000476476 274 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC015908.1-201ENST00000478739 476 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CLDN3O15551 AC112198.4-201ENST00000515450 351 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.34□□□□□ -1.87
CLDN3O15551 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.34□□□□□ -1.87
CLDN3O15551 AC022690.1-201ENST00000526681 550 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.34□□□□□ -1.87
CLDN3O15551 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.34□□□□□ -1.87
CLDN3O15551 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.34□□□□□ -1.87
CLDN3O15551 AC104072.1-201ENST00000568817 668 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC138915.2-201ENST00000569776 97 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.34□□□□□ -1.87
CLDN3O15551 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.34□□□□□ -1.87
CLDN3O15551 BDH2P1-201ENST00000602288 736 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AP002802.2-201ENST00000605877 235 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AP001521.1-201ENST00000609150 300 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC006249.1-201ENST00000621223 471 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC018816.2-201ENST00000621460 353 ntBASIC3.34□□□□□ -1.87
CLDN3O15551 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.34□□□□□ -1.87
CLDN3O15551 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CLDN3O15551 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
CLDN3O15551 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CLDN3O15551 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CLDN3O15551 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.34□□□□□ -1.88
CLDN3O15551 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CLDN3O15551 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLDN3O15551 ANKRD36P1-201ENST00000344424 659 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 RNU6-173P-201ENST00000364215 104 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CLDN3O15551 SNORA54-201ENST00000384281 123 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 SNORA48.2-201ENST00000390926 124 ntBASIC3.33□□□□□ -1.88
CLDN3O15551 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms