Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC093151.1-201ENST00000427711 313 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL669831.1-202ENST00000428504 417 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC119618.1-201ENST00000434191 222 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PRSS3P4-201ENST00000453323 162 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL30P15-201ENST00000457129 321 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL23AP56-201ENST00000460778 453 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC128713.1-201ENST00000471495 306 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL7P20-201ENST00000520308 745 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP001781.1-201ENST00000530977 207 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FAM157A-202ENST00000615155 405 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC078938.1-201ENST00000620993 318 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL049780.3-201ENST00000624612 1583 ntBASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.55□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC090017.1-201ENST00000548612 1779 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-1188P-201ENST00000363795 107 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-115P-201ENST00000364310 107 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.373-201ENST00000365600 103 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.530-201ENST00000384587 101 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL31P12-201ENST00000422587 358 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL23AP30-201ENST00000432419 501 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPS29P9-201ENST00000440360 171 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC000111.2-201ENST00000448200 210 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC104308.1-201ENST00000454621 333 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GMFBP1-201ENST00000467831 427 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC109327.1-201ENST00000471666 403 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL12P20-201ENST00000475538 479 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 TRBV1-201ENST00000476502 284 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPS27P23-201ENST00000487608 251 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPS4XP18-201ENST00000495480 763 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC093840.1-201ENST00000511599 336 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RGS4-209ENST00000531057 544 ntTSL 4 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 OR4T1P-201ENST00000554933 911 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR3667-201ENST00000581025 74 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AP001521.1-201ENST00000609150 300 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR6853-201ENST00000619642 74 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 USP44-208ENST00000552440 1818 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CCT8P1-201ENST00000413611 1657 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 NRK-204ENST00000540278 1687 ntTSL 2 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC097504.1-201ENST00000515103 2415 ntBASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MFF-206ENST00000392059 1710 ntTSL 5 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.5-201ENST00000362334 102 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-238P-201ENST00000363313 106 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 Y_RNA.364-201ENST00000365532 101 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MIR1-2-201ENST00000384961 85 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL7P10-201ENST00000417407 739 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC009965.2-201ENST00000425328 970 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FABP5P14-201ENST00000437273 393 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL12P25-201ENST00000455592 494 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RPL5P30-201ENST00000465511 891 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RN7SL319P-201ENST00000480656 221 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 VN1R104P-201ENST00000505115 1009 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 RNU6-410P-201ENST00000517006 107 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms