| BACE2 | Q9Y5Z0 | MEIG1-201 | ENST00000378240 | 507 nt | APPRIS P1 TSL 2 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | CBLL1-202 | ENST00000415884 | 804 nt | TSL 5 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL592435.1-201 | ENST00000416401 | 469 nt | TSL 3 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL500522.1-201 | ENST00000423667 | 318 nt | TSL 3 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MTCO2P12-201 | ENST00000427426 | 682 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | EZH2P1-201 | ENST00000431167 | 291 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPL34P6-201 | ENST00000432390 | 345 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | KCND3-IT1-201 | ENST00000439736 | 376 nt | TSL 3 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPL21P133-201 | ENST00000443666 | 476 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC011998.3-201 | ENST00000457053 | 254 nt | TSL 3 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SNORD121B-201 | ENST00000458838 | 81 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPS23P7-201 | ENST00000466210 | 444 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC023424.1-201 | ENST00000496058 | 459 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | COX7A2P2-201 | ENST00000505291 | 250 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SLIT2-IT1-201 | ENST00000515882 | 601 nt | TSL 1 (best) BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RNU4-29P-201 | ENST00000515943 | 174 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RNU4ATAC8P-201 | ENST00000516196 | 109 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | IGLVIV-53-201 | ENST00000520107 | 367 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SUMO2P20-201 | ENST00000520803 | 283 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | LINCR-0001-203 | ENST00000524047 | 545 nt | TSL 4 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | BNIP3P6-201 | ENST00000549284 | 499 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC091231.1-201 | ENST00000558443 | 391 nt | TSL 5 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC134312.3-201 | ENST00000566155 | 213 nt | TSL 2 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MIR4742-201 | ENST00000581069 | 85 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC020910.2-201 | ENST00000603635 | 610 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL356218.2-201 | ENST00000605264 | 187 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL731566.2-201 | ENST00000618971 | 317 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC079684.1-201 | ENST00000621405 | 437 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC244100.1-202 | ENST00000621554 | 382 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL138713.1-201 | ENST00000624026 | 2130 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SCEL-205 | ENST00000535157 | 3096 nt | APPRIS ALT2 TSL 2 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | PTPRD-213 | ENST00000537002 | 8224 nt | TSL 1 (best) BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ADGRF2-202 | ENST00000398742 | 4895 nt | APPRIS P1 TSL 5 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MPDZ-204 | ENST00000381022 | 7589 nt | APPRIS ALT2 TSL 5 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | GPBP1-201 | ENST00000264779 | 1786 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC007529.1-201 | ENST00000418574 | 2178 nt | BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | EYA1-203 | ENST00000388740 | 3788 nt | TSL 5 BASIC | 5.01 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | PLCH1-201 | ENST00000334686 | 6128 nt | APPRIS P3 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | UBE4A-203 | ENST00000545354 | 2149 nt | TSL 2 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | CAST-207 | ENST00000395813 | 4356 nt | APPRIS ALT2 TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ACADM-203 | ENST00000420607 | 1332 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | R3HDM1-201 | ENST00000264160 | 4648 nt | APPRIS P3 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MYBPC1-208 | ENST00000547405 | 3834 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MTRNR2L11-201 | ENST00000604646 | 1552 nt | APPRIS P1 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ERMN-201 | ENST00000397283 | 3760 nt | TSL 2 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | KTN1-202 | ENST00000395308 | 4134 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ACKR4-201 | ENST00000249887 | 1914 nt | APPRIS P1 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ZNF137P-201 | ENST00000456718 | 1920 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | TTC3-204 | ENST00000399017 | 10363 nt | APPRIS P1 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ZBTB38-201 | ENST00000321464 | 3588 nt | APPRIS P1 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.326-201 | ENST00000365176 | 113 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.431-201 | ENST00000384086 | 102 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MIR558-201 | ENST00000384920 | 94 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MIR454-201 | ENST00000390180 | 115 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | U3.29-201 | ENST00000391296 | 212 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL590762.2-201 | ENST00000395798 | 571 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | CTNNA2-204 | ENST00000409266 | 432 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RNU6-193P-201 | ENST00000410977 | 107 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RN7SKP140-201 | ENST00000411196 | 284 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPL31P2-201 | ENST00000413849 | 377 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | NAP1L1P2-201 | ENST00000414182 | 1089 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC073323.1-201 | ENST00000419832 | 451 nt | TSL 2 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | NCOR1P3-201 | ENST00000420479 | 303 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL645937.1-202 | ENST00000421799 | 937 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC005062.1-206 | ENST00000424516 | 710 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | BX005214.1-201 | ENST00000427327 | 476 nt | TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SAR1AP4-201 | ENST00000429225 | 591 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | HMGB3P9-201 | ENST00000441799 | 583 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MTND3P16-201 | ENST00000452205 | 344 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL356981.1-201 | ENST00000454879 | 684 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPS20P21-201 | ENST00000466859 | 343 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC007537.2-201 | ENST00000472093 | 511 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | RPL36AP41-201 | ENST00000493820 | 306 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL359273.1-202 | ENST00000505585 | 905 nt | TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC105417.1-201 | ENST00000514691 | 285 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AP001207.3-201 | ENST00000520268 | 491 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC079098.1-202 | ENST00000523150 | 573 nt | TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC128657.1-201 | ENST00000549459 | 145 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL121821.2-201 | ENST00000556081 | 394 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC011939.2-201 | ENST00000567396 | 428 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MIR4716-201 | ENST00000579628 | 84 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC069061.3-201 | ENST00000582254 | 823 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | LINC00904-201 | ENST00000604453 | 471 nt | TSL 2 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC021646.1-201 | ENST00000605469 | 484 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL356130.2-201 | ENST00000612554 | 404 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AL590491.2-201 | ENST00000614608 | 499 nt | TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SEPT14P19-202 | ENST00000632397 | 370 nt | TSL 3 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | PICALM-209 | ENST00000528398 | 2049 nt | TSL 2 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ELOVL7-203 | ENST00000505959 | 4165 nt | TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | KCNJ16-204 | ENST00000585558 | 4014 nt | TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | DCX-202 | ENST00000358070 | 9405 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | ERBIN-208 | ENST00000506030 | 4386 nt | TSL 1 (best) BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | CFAP70-201 | ENST00000310715 | 3703 nt | APPRIS P1 TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC090971.4-201 | ENST00000560291 | 1800 nt | BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SAMD12-202 | ENST00000409003 | 8866 nt | APPRIS P1 TSL 5 BASIC | 5 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | MYBPC1-201 | ENST00000361466 | 3899 nt | APPRIS P4 TSL 1 (best) BASIC | 4.99 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | AC004817.4-201 | ENST00000602396 | 3625 nt | BASIC | 4.99 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | SDC2-204 | ENST00000519914 | 1318 nt | TSL 2 BASIC | 4.99 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | PLCB1-210 | ENST00000612075 | 6576 nt | TSL 5 BASIC | 4.99 | □□□□□ -1.61 | | |
| BACE2 | Q9Y5Z0 | LINC02475-202 | ENST00000512678 | 2622 nt | TSL 1 (best) BASIC | 4.99 | □□□□□ -1.61 | | |