Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 CLCA3P-203ENST00000490028 2781 ntBASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
PCDHGA4Q9Y5G9 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RNU6-653P-201ENST00000363074 106 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 Y_RNA.136-201ENST00000363444 102 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RNU6-827P-201ENST00000365553 106 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR137-201ENST00000385223 102 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RPL30P13-201ENST00000418873 348 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 HMGB1P27-201ENST00000431429 603 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC073901.1-201ENST00000462471 408 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC022795.1-201ENST00000473808 480 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RPS27AP9-201ENST00000477681 438 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RN7SL187P-201ENST00000495587 303 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RNU1-86P-201ENST00000516108 154 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR892C-201ENST00000516410 77 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RNU1-107P-201ENST00000516617 154 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC009127.3-201ENST00000570531 403 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR4423-201ENST00000580922 80 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC011921.2-201ENST00000589465 152 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 B3GNTL1P2-201ENST00000603673 288 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR6071-201ENST00000616741 78 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR6130-201ENST00000619419 109 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 AC089999.3-201ENST00000622440 577 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR1910-201ENST00000636955 80 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
PCDHGA4Q9Y5G9 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 SNORD35A-201ENST00000363389 86 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 Y_RNA.446-201ENST00000384178 104 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR92A2-201ENST00000385299 75 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC087752.2-201ENST00000521219 281 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ATP5F1P5-201ENST00000526403 760 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 MIR5095-201ENST00000578844 88 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC008749.1-201ENST00000597650 306 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC131009.3-201ENST00000621809 287 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AC005514.1-201ENST00000623521 208 ntBASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
PCDHGA4Q9Y5G9 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms