Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MIR6500-201ENST00000622700 86 ntBASIC3.12□□□□□ -1.91
FOXA2Q9Y261 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 MIR4275-201ENST00000636486 87 ntBASIC3.12□□□□□ -1.91
FOXA2Q9Y261 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA2Q9Y261 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNU6-853P-201ENST00000364306 107 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNA5SP97-201ENST00000365006 84 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNU6-637P-201ENST00000384050 107 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 SKINT1L-201ENST00000401057 817 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL354719.1-201ENST00000406535 843 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 HSPE1P8-201ENST00000406997 288 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNA5SP38-201ENST00000410750 119 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RN7SKP263-201ENST00000411194 309 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 MTCO1P17-201ENST00000411522 491 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 BX842559.1-201ENST00000419615 532 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 USP9YP36-201ENST00000424581 829 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL356867.1-201ENST00000429623 299 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RPL21P89-201ENST00000444021 467 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 NUTF2P7-201ENST00000453086 375 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 MTND2P24-201ENST00000453434 806 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC103987.1-201ENST00000473394 348 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC084198.1-201ENST00000477747 402 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL049874.1-201ENST00000489560 388 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 TRBV12-2-201ENST00000489763 344 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC034222.1-201ENST00000494052 532 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC093809.1-201ENST00000509155 340 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNU6-840P-201ENST00000517275 65 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RNA5SP179-201ENST00000517284 121 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 HMGN1P28-201ENST00000521340 364 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AP003497.1-201ENST00000528472 562 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC006539.2-201ENST00000601729 572 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AL606490.9-201ENST00000603331 271 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC091167.4-201ENST00000605079 184 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC107952.2-201ENST00000606048 486 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC009268.2-201ENST00000621925 457 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC079597.1-201ENST00000624306 508 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 AC244258.1-201ENST00000637553 1071 ntBASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
FOXA2Q9Y261 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 CEP170P1-201ENST00000502249 4587 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RNU6-931P-201ENST00000363850 107 ntBASIC3.1□□□□□ -1.91
FOXA2Q9Y261 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.1□□□□□ -1.91
FOXA2Q9Y261 RNU6-723P-201ENST00000383973 107 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms