Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RPL21P132-201ENST00000331267 462 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RNA5SP456-201ENST00000364002 114 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MIR142-201ENST00000384835 87 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RPS15AP28-201ENST00000435088 386 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RPL21P104-201ENST00000464143 478 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RPL23AP49-201ENST00000492925 468 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MTCO2P32-201ENST00000514865 403 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC025881.1-201ENST00000518851 512 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MTCO2P22-201ENST00000603246 681 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RPL23AP88-201ENST00000605759 454 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC067747.1-201ENST00000608026 250 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 CR589904.2-201ENST00000612533 440 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 uc_338.9-201ENST00000617424 182 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 SNORD21-201ENST00000383953 95 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 HMGB1P11-201ENST00000413899 637 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AL135786.1-201ENST00000415892 214 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC129850.1-201ENST00000436203 508 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MRPL35P4-201ENST00000453682 566 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC004263.1-201ENST00000479327 332 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 PCNAP1-201ENST00000505363 709 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC117525.1-201ENST00000515228 503 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 RNA5SP281-201ENST00000516504 135 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AP001646.1-201ENST00000527936 915 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 MIR4474-201ENST00000579189 78 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC005021.1-201ENST00000608730 355 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 AC009831.4-201ENST00000620744 325 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 FAM157B-203ENST00000639350 358 ntBASIC2.12□□□□□ -2.07
SCN3AQ9NY46 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 METTL21EP-201ENST00000298105 713 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 RNU6-50P-201ENST00000362356 103 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 SNORA51.2-201ENST00000364595 132 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AL445529.1-201ENST00000398713 389 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 ATF1P1-201ENST00000406040 927 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC098826.1-201ENST00000433943 471 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC023512.1-201ENST00000444513 499 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC087190.1-201ENST00000484462 480 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC090071.1-201ENST00000507713 644 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 SNORA31.26-201ENST00000517250 137 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC008083.2-201ENST00000546707 476 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 SYF2P1-201ENST00000550658 413 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC060766.3-201ENST00000591442 263 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC090525.3-201ENST00000605601 189 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 AC008432.1-201ENST00000615912 1320 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 ZNF658B-202ENST00000615961 3375 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.11□□□□□ -2.07
SCN3AQ9NY46 PABPC1P7-201ENST00000413177 1513 ntBASIC2.11□□□□□ -2.07
SCN3AQ9NY46 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC241520.1-201ENST00000422654 1099 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AL031663.1-201ENST00000437445 219 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 HIGD1AP2-201ENST00000446367 280 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 HMGB1P38-201ENST00000490557 577 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 GTF2IP9-201ENST00000502460 301 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 YWHAEP4-201ENST00000505390 198 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC017037.2-201ENST00000513850 890 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AP000889.2-201ENST00000532684 490 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC009220.3-201ENST00000604318 586 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC104237.2-201ENST00000612456 443 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 MIR1291-201ENST00000627649 87 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 ZNF271P-202ENST00000465539 1970 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RNU1-91P-201ENST00000364746 163 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RNU6-629P-201ENST00000384061 103 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 RNU4-31P-201ENST00000384211 141 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 AC105402.1-201ENST00000413336 545 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 ATP5F1P1-201ENST00000433775 569 ntBASIC2.1□□□□□ -2.07
SCN3AQ9NY46 USP9YP8-201ENST00000441913 500 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms