Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.3□□□□□ -1.88
NKX3-1Q99801 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 PABPC1P9-201ENST00000426076 1612 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 ELL2P3-201ENST00000457883 1602 ntBASIC3.3□□□□□ -1.88
NKX3-1Q99801 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NKX3-1Q99801 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-1Q99801 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-1Q99801 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-1Q99801 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL672167.1-206ENST00000356293 943 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 RNA5SP258-201ENST00000362750 119 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 RNU6-629P-201ENST00000384061 103 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 RNU6-821P-201ENST00000390995 107 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC245052.5-201ENST00000416320 649 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC017083.1-201ENST00000428093 483 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 SDCBPP1-201ENST00000440192 890 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 TRIM60P18-201ENST00000441518 828 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 RPL36AP33-201ENST00000450395 310 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 HMGN2P7-201ENST00000456186 273 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC087312.1-201ENST00000471411 480 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 COX7A2P2-201ENST00000505291 250 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 MTND5P4-201ENST00000514978 288 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 RNU6-352P-201ENST00000516908 107 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC106038.2-201ENST00000520706 568 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 OR5AP1P-201ENST00000529730 940 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL121766.1-201ENST00000547436 487 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC091516.1-201ENST00000549191 703 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC053481.3-201ENST00000577881 843 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.29□□□□□ -1.88
NKX3-1Q99801 AF131215.7-201ENST00000602443 707 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 BCRP9-201ENST00000605312 388 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC080013.6-201ENST00000606185 215 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AL031775.1-201ENST00000607014 887 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 U73479.1-201ENST00000618062 168 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 AC006927.3-201ENST00000638789 384 ntBASIC3.29□□□□□ -1.88
NKX3-1Q99801 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
NKX3-1Q99801 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC066616.2-201ENST00000559334 1481 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NKX3-1Q99801 RNA5SP167-201ENST00000365461 116 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 RNU6-744P-201ENST00000365557 107 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 RNU6-1316P-201ENST00000384242 108 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 SOD2P1-201ENST00000396543 562 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 MTCYBP36-201ENST00000404146 440 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 RNU2-47P-201ENST00000410649 186 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 TOMM22P1-201ENST00000418578 312 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 Z97055.1-201ENST00000419730 712 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL513174.1-201ENST00000423182 629 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 BX119904.4-201ENST00000424402 301 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL365184.2-201ENST00000431139 435 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 EZH2P1-201ENST00000431167 291 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 NDUFB1P1-201ENST00000435191 180 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 RSU1P2-202ENST00000437884 485 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC122718.1-201ENST00000439448 744 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 RPS29P7-201ENST00000439662 171 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 RPL21P89-201ENST00000444021 467 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 CDC27P1-201ENST00000445384 715 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 AC239367.2-201ENST00000447309 705 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-1Q99801 AP000542.1-201ENST00000448473 371 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 RPL7P52-201ENST00000449200 742 ntBASIC3.28□□□□□ -1.88
NKX3-1Q99801 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms