Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU6-878P-201ENST00000384578 110 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AL355143.1-201ENST00000407101 841 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 RNA5SP31-201ENST00000411144 127 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 SDCBPP3-201ENST00000419629 891 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 YPEL5P1-201ENST00000419731 367 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC007435.1-201ENST00000421086 415 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 CST9LP2-201ENST00000437612 320 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 USP9YP22-201ENST00000438971 294 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 RABEPKP1-201ENST00000440529 1026 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 Z75741.1-201ENST00000446793 314 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 RPS27AP1-201ENST00000475545 471 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 MTCYBP16-201ENST00000509187 1129 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC010625.1-201ENST00000511296 403 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 RNU6-276P-201ENST00000516114 96 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC010376.1-201ENST00000522101 334 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 MAGOH2P-202ENST00000584384 429 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AL390838.2-201ENST00000602394 274 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC096947.1-201ENST00000603233 470 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AL162713.1-201ENST00000604480 262 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AC005332.6-201ENST00000613178 446 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 AL353748.2-201ENST00000622148 471 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.23□□□□□ -1.89
VPS35Q96QK1 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS35Q96QK1 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
VPS35Q96QK1 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC107982.1-201ENST00000507171 1300 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 RNU4-51P-201ENST00000364206 140 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 snoZ40.1-201ENST00000364540 72 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS35Q96QK1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 SNRPEP2-201ENST00000397592 279 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 CYCSP45-201ENST00000402289 315 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL357075.1-201ENST00000404107 726 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 RNU2-42P-201ENST00000410697 113 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 RNU4-47P-201ENST00000410876 114 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 OR4K6P-201ENST00000416478 897 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 RPL23AP22-201ENST00000437556 453 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 HMGB3P11-201ENST00000440127 604 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 SSXP4-201ENST00000451349 245 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 ELOCP23-201ENST00000452014 332 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 USP9YP34-201ENST00000453983 808 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC104982.1-201ENST00000478775 574 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 KLHL2P1-201ENST00000508691 521 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC105914.1-201ENST00000511798 226 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 SNORA19.3-201ENST00000516165 130 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS35Q96QK1 SNRPGP16-201ENST00000533275 226 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC004024.1-201ENST00000549244 247 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 CCDC58P3-201ENST00000590792 430 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC245036.5-201ENST00000596330 847 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AP001330.4-201ENST00000604350 154 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC007179.3-201ENST00000604976 235 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL390240.1-201ENST00000612950 384 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL355810.1-201ENST00000614629 552 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC123767.1-202ENST00000620407 817 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AL049777.1-201ENST00000622740 518 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC095031.1-201ENST00000623685 672 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC004808.1-201ENST00000627671 721 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC073476.4-201ENST00000628409 72 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 AC013437.2-201ENST00000639587 677 ntBASIC3.22□□□□□ -1.89
VPS35Q96QK1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS35Q96QK1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.22□□□□□ -1.89
VPS35Q96QK1 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.89
VPS35Q96QK1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS35Q96QK1 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 OR5H2-201ENST00000355273 945 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VPS35Q96QK1 RNU6-216P-201ENST00000363282 104 ntBASIC3.21□□□□□ -1.9
VPS35Q96QK1 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS35Q96QK1 SKINT1L-201ENST00000401057 817 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms