Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RN7SL504P-201ENST00000494496 287 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 COX7A2P2-201ENST00000505291 250 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC110794.1-201ENST00000505816 425 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 SNORD59.2-201ENST00000516873 68 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 DUXAP6-201ENST00000553858 601 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC245036.5-201ENST00000596330 847 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC006557.5-201ENST00000603126 811 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AL365400.2-201ENST00000605604 902 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 SNORA50A-202ENST00000629536 136 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 AC010733.2-201ENST00000589496 5702 ntBASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.44□□□□□ -1.86
HDDC3Q8N4P3 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 Z83843.1-201ENST00000604070 3685 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC118273.1-201ENST00000525324 3006 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RNA5SP374-201ENST00000362939 125 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RNU6-7-201ENST00000364784 107 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RNU6-8-201ENST00000365467 107 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL391417.1-201ENST00000404100 426 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RSL24D1P1-201ENST00000404972 493 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RNU2-42P-201ENST00000410697 113 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC127526.1-201ENST00000417526 366 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 USP9YP22-201ENST00000438971 294 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC026410.2-201ENST00000460281 156 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 RPS15AP17-201ENST00000470598 390 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 PHBP14-201ENST00000512887 367 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC087808.1-201ENST00000520501 361 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 IGHV3-76-201ENST00000522465 295 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 CR383656.7-201ENST00000548164 174 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 SETP7-201ENST00000552169 453 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 EIF4BP1-201ENST00000554881 351 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL121576.1-201ENST00000556055 276 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 MTCO3P24-201ENST00000572729 782 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 MIR3124-201ENST00000582636 67 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 MAGOH2P-202ENST00000584384 429 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 MIR4276-201ENST00000584832 70 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC012443.1-201ENST00000605605 231 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC099778.2-201ENST00000610904 211 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AL138955.1-201ENST00000622881 1040 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC090897.3-201ENST00000636973 1157 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 CUL1P1-201ENST00000509510 2425 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AP005901.5-201ENST00000545779 1796 ntBASIC3.43□□□□□ -1.86
HDDC3Q8N4P3 AC092326.2-201ENST00000624772 1561 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 MIR493-201ENST00000385254 89 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 EI24P2-201ENST00000397776 1076 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 U3.42-201ENST00000408746 214 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 RNU2-47P-201ENST00000410649 186 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AL353678.1-201ENST00000422735 741 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 MTATP6P4-201ENST00000427725 675 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC140076.1-201ENST00000449897 361 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 SUMO2P2-201ENST00000456482 255 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC079203.1-201ENST00000487972 404 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 RNA5SP341-201ENST00000516261 117 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 OR5AP1P-201ENST00000529730 940 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC026333.2-201ENST00000542164 106 ntBASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.42□□□□□ -1.86
HDDC3Q8N4P3 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms