Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 DDX43P2-201ENST00000604753 1354 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 SNORA63.1-201ENST00000362493 131 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNA5SP295-201ENST00000362655 121 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNU6-289P-201ENST00000364093 107 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNU6-283P-201ENST00000364788 107 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 MIR135A2-201ENST00000384854 100 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNA5SP424-201ENST00000390988 115 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RNU2-43P-201ENST00000410306 190 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 YPEL5P1-201ENST00000419731 367 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RPS29P31-201ENST00000446147 164 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 Z73417.1-201ENST00000447373 778 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RPL23AP35-201ENST00000451906 501 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 ANKRD26P4-201ENST00000455755 950 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 RPL7P49-201ENST00000471402 708 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC104563.1-201ENST00000476147 376 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC104090.1-201ENST00000506341 1171 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC034244.1-201ENST00000507687 207 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 TXNP6-201ENST00000510190 310 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC024589.1-201ENST00000512207 263 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 COX6CP8-201ENST00000522620 226 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AL391156.1-201ENST00000554965 554 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 DUXAP1-201ENST00000556632 463 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC112220.3-201ENST00000605502 502 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC012443.1-201ENST00000605605 231 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC092354.2-201ENST00000607786 514 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC069200.1-201ENST00000609511 323 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC084757.4-201ENST00000616350 526 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 AC023510.2-201ENST00000622162 746 ntBASIC3.78□□□□□ -1.8
PRPF39Q86UA1 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PRPF39Q86UA1 TNPO1P3-201ENST00000436471 2662 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 RNU6-97P-201ENST00000363387 104 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 Y_RNA.234-201ENST00000364409 97 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 RNU6-157P-201ENST00000383957 107 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 MIR23A-201ENST00000385245 73 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC007066.1-201ENST00000392902 381 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 RPS29P4-201ENST00000414733 161 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC083875.1-201ENST00000419509 405 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 HSPD1P21-201ENST00000436541 245 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 THAP5P1-201ENST00000439089 262 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 OR5AP1P-201ENST00000529730 940 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 MTND1P24-201ENST00000552175 861 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 MED28P6-201ENST00000558776 231 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AL596327.1-201ENST00000603629 213 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC012314.7-201ENST00000619693 93 ntBASIC3.77□□□□□ -1.81
PRPF39Q86UA1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PRPF39Q86UA1 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms