Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 IPO5P1-202ENST00000600039 287 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 AC113403.1-201ENST00000604910 193 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 AC006329.2-201ENST00000611491 394 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 uc_338.13-201ENST00000618243 179 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 AC007546.1-201ENST00000619452 559 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 MIR7154-201ENST00000620673 73 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 AC012150.2-201ENST00000621300 544 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 AC027287.1-201ENST00000553115 1453 ntBASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
PTCHD3Q3KNS1 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC024560.2-201ENST00000507981 1497 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 Y_RNA.248-201ENST00000364501 109 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RNA5SP479-201ENST00000364858 117 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 Y_RNA.554-201ENST00000384672 102 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RNU6-821P-201ENST00000390995 107 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 MTCO3P40-201ENST00000392516 676 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL356967.1-201ENST00000406305 431 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 BTF3P7-201ENST00000407097 488 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 SNORA11F-201ENST00000408237 128 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC245052.5-201ENST00000416320 649 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RBMX2P4-201ENST00000441256 376 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL590399.6-201ENST00000446396 307 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 NUTF2P3-201ENST00000448540 384 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC079448.1-201ENST00000449377 373 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 NUTF2P7-201ENST00000453086 375 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC079804.1-201ENST00000461922 436 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RPS26P28-201ENST00000470806 348 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC023598.1-201ENST00000472521 361 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC055855.1-201ENST00000489563 579 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 SNORA31.9-201ENST00000516429 84 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 Vault.3-201ENST00000516676 95 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 CYCSP29-201ENST00000533731 318 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 UBE2L4-201ENST00000587688 464 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC068790.3-201ENST00000602988 553 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL354984.3-201ENST00000604803 325 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC010680.4-201ENST00000605334 543 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC015813.4-201ENST00000610469 179 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC090970.3-201ENST00000612566 866 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC068831.8-201ENST00000620171 435 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AC002550.2-201ENST00000621246 394 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL359880.1-201ENST00000621879 266 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 AL158801.5-201ENST00000623123 465 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 MIR6863-201ENST00000636112 90 ntBASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
PTCHD3Q3KNS1 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 Y_RNA.9-201ENST00000362354 101 ntBASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 AL583835.1-201ENST00000399570 407 ntBASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 RPL23AP26-201ENST00000412728 464 ntBASIC4.19□□□□□ -1.74
PTCHD3Q3KNS1 MTCYBP24-201ENST00000420387 1106 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms