Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.36□□□□□ -1.55
SOX4Q06945 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
SOX4Q06945 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SOX4Q06945 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 RNU6-82P-201ENST00000363970 107 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RNVU1-6-201ENST00000364688 164 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 RNU6-26P-201ENST00000383985 107 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RN7SKP16-201ENST00000410180 299 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RNU2-47P-201ENST00000410649 186 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.36□□□□□ -1.55
SOX4Q06945 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.36□□□□□ -1.55
SOX4Q06945 COX6CP13-201ENST00000428703 226 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AP000936.3-201ENST00000438127 255 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RAC1P7-201ENST00000445367 377 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.36□□□□□ -1.55
SOX4Q06945 AL031584.1-201ENST00000447169 754 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC104073.1-201ENST00000451988 151 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 CBX1P2-201ENST00000453841 458 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC079804.1-201ENST00000461922 436 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RPL21P6-201ENST00000479171 504 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 RN7SL441P-201ENST00000492388 296 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC079140.5-201ENST00000507882 310 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 CDH12P4-201ENST00000517835 295 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 CDH12P3-201ENST00000517935 295 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.36□□□□□ -1.55
SOX4Q06945 CDH12P1-201ENST00000518435 295 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC100784.1-201ENST00000522790 310 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.36□□□□□ -1.55
SOX4Q06945 AL137161.1-201ENST00000532231 390 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5.36□□□□□ -1.55
SOX4Q06945 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.36□□□□□ -1.55
SOX4Q06945 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.36□□□□□ -1.55
SOX4Q06945 COX6CP3-201ENST00000580869 223 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 MIR4737-201ENST00000583979 81 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 PRPF19P1-201ENST00000584766 898 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC023043.2-201ENST00000589678 1026 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.36□□□□□ -1.55
SOX4Q06945 AP000843.1-201ENST00000624880 701 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AL669831.3-213ENST00000636676 183 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 API5P2-201ENST00000397055 1498 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.36□□□□□ -1.55
SOX4Q06945 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 MTND5P30-201ENST00000452896 1731 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 PNPT1P2-201ENST00000456768 2050 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 AL138713.1-201ENST00000624026 2130 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.36□□□□□ -1.55
SOX4Q06945 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
SOX4Q06945 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 AP001029.2-203ENST00000589795 4910 ntBASIC5.36□□□□□ -1.55
SOX4Q06945 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SOX4Q06945 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.35□□□□□ -1.55
SOX4Q06945 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX4Q06945 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 RNU6-249P-201ENST00000363016 102 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 RNU6-511P-201ENST00000363496 107 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 Y_RNA.574-201ENST00000384766 95 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SOX4Q06945 RNU6-278P-201ENST00000390945 109 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 SOD2P1-201ENST00000396543 562 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX4Q06945 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX4Q06945 AL691482.1-201ENST00000453255 87 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 RPL23AP56-201ENST00000460778 453 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 RPS17P2-201ENST00000461663 408 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC087879.1-201ENST00000474343 374 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX4Q06945 AC104136.1-201ENST00000512969 394 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX4Q06945 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 EDDM3DP-201ENST00000554692 434 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.35□□□□□ -1.55
SOX4Q06945 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX4Q06945 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.35□□□□□ -1.55
SOX4Q06945 MIR4504-201ENST00000577413 92 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.35□□□□□ -1.55
SOX4Q06945 AC020910.3-201ENST00000603701 874 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC092747.3-201ENST00000603769 301 ntBASIC5.35□□□□□ -1.55
SOX4Q06945 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX4Q06945 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX4Q06945 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
SOX4Q06945 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SOX4Q06945 AC099654.2-201ENST00000433031 1980 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms