Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
FOXA1P55317 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
FOXA1P55317 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
FOXA1P55317 MIR6073-201ENST00000352083 89 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AL672167.1-206ENST00000356293 943 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 DSTNP4-201ENST00000399472 474 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 AL162578.1-201ENST00000406202 378 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 RNU2-52P-201ENST00000410680 190 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AL158050.1-201ENST00000416077 457 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 COTL1P1-201ENST00000422309 375 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 RPL36P19-201ENST00000430744 301 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AL513175.1-201ENST00000431492 780 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AL512661.1-201ENST00000434586 1253 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 HMGB1P45-201ENST00000435986 653 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA1P55317 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC2.44□□□□□ -2.02
FOXA1P55317 HMGN2P16-201ENST00000456802 261 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA1P55317 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA1P55317 AF279873.1-201ENST00000523393 313 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC239860.2-201ENST00000525886 270 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA1P55317 EIF5A2P1-201ENST00000564027 460 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 AC090616.5-202ENST00000582111 297 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC060766.3-201ENST00000591442 263 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AL033523.1-201ENST00000605153 153 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 ATP1B3P1-201ENST00000605365 821 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 HMGN2P28-201ENST00000606102 262 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC245100.7-201ENST00000609678 442 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC006023.2-201ENST00000609916 167 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
FOXA1P55317 AL445493.3-201ENST00000619568 477 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC006213.5-201ENST00000619673 288 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA1P55317 AC006386.2-201ENST00000624491 75 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC012005.1-201ENST00000624575 75 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 AC091948.2-201ENST00000636510 279 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 AP000526.1-201ENST00000603308 1388 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA1P55317 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 FRG1BP-201ENST00000278882 761 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 RNU6-600P-201ENST00000362524 99 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 SNORA80A-201ENST00000363922 136 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 SNORA7.2-201ENST00000364446 145 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 SNORA51.2-201ENST00000364595 132 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 U8.8-201ENST00000365399 135 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 Y_RNA.510-201ENST00000384511 114 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA1P55317 ATP5F1P6-201ENST00000402768 767 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 RNU6-272P-201ENST00000411028 104 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 AL121882.1-201ENST00000422893 417 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC236972.1-201ENST00000433225 199 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC107083.1-201ENST00000439643 279 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC000041.1-201ENST00000439655 175 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 RAB11AP1-201ENST00000442978 646 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 ZNF736P6Y-201ENST00000447526 1213 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 RPL21P47-201ENST00000483696 477 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 RPS27P23-201ENST00000487608 251 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA1P55317 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA1P55317 RNU6-202P-201ENST00000515998 96 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 AP000916.1-201ENST00000533869 835 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 MIR4504-201ENST00000577413 92 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 AL009028.1-201ENST00000604895 802 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC007619.2-201ENST00000605743 379 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AL021368.1-201ENST00000607490 540 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC107308.1-201ENST00000615897 301 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 AC231759.1-201ENST00000616455 597 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 AC005858.4-201ENST00000623191 700 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.43□□□□□ -2.02
FOXA1P55317 AC132825.7-201ENST00000638744 335 ntBASIC2.43□□□□□ -2.02
FOXA1P55317 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.43□□□□□ -2.02
FOXA1P55317 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
FOXA1P55317 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.43□□□□□ -2.02
FOXA1P55317 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
FOXA1P55317 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms