Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
CPSF3Q9UKF6 NUP58P1-201ENST00000502546 1738 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RNA5SP295-201ENST00000362655 121 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RNU6-1122P-201ENST00000384449 107 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RPL23AP29-201ENST00000397284 453 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RPS7P15-201ENST00000415804 584 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RAD23BP2-201ENST00000416003 1207 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 TIMM9P2-201ENST00000419324 266 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MTND3P1-201ENST00000441336 220 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 USP9YP34-201ENST00000453983 808 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 CFTRP1-201ENST00000456646 183 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC026410.2-201ENST00000460281 156 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC008155.2-201ENST00000464337 397 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC034244.1-201ENST00000507687 207 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC026784.1-201ENST00000507986 352 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RNU5A-4P-201ENST00000516588 111 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 SNORA31.20-201ENST00000517111 133 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MIR5186-201ENST00000577504 120 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MIR4637-201ENST00000582405 84 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 BNIP3P24-201ENST00000593398 557 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AL158042.1-201ENST00000605338 460 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AL355365.1-201ENST00000616480 294 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MIR7975-201ENST00000619350 68 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MTND5P24-201ENST00000438892 1767 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 PRO1804-201ENST00000623780 2050 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MTND4P34-201ENST00000572715 1371 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 AL672296.1-201ENST00000427780 2158 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 MTCO1P12-201ENST00000414273 1543 ntBASIC3.75□□□□□ -1.81
CPSF3Q9UKF6 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 FAM133CP-201ENST00000332869 704 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNA5SP258-201ENST00000362750 119 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNA5SP50-201ENST00000363731 107 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNU6-157P-201ENST00000383957 107 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNU6-328P-201ENST00000390887 106 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 U3.29-201ENST00000391296 212 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 TAF9BP1-201ENST00000396646 746 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNU6-757P-201ENST00000410334 100 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RNU4-78P-201ENST00000410940 126 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 MTCO3P12-201ENST00000416718 547 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AIMP1P1-201ENST00000418670 937 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC002075.2-201ENST00000425207 252 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AP000907.1-201ENST00000428428 510 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC097713.2-201ENST00000430199 356 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RPS25P9-201ENST00000435591 252 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 SETP5-201ENST00000437270 562 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AL591719.1-201ENST00000444669 744 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 RPS29P31-201ENST00000446147 164 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 CYCSP35-201ENST00000451978 304 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC010285.1-201ENST00000470580 392 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 TMEM251P1-201ENST00000503717 318 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 HMGB3P15-201ENST00000507326 574 ntBASIC3.74□□□□□ -1.81
CPSF3Q9UKF6 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 221.8 ms