Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RNU6-780P-201ENST00000391030 104 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 MIR921-201ENST00000401133 56 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 DPPA2P1-201ENST00000428060 556 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC000111.3-201ENST00000433478 193 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC132479.1-201ENST00000449160 144 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC027673.1-201ENST00000456245 405 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC023598.1-201ENST00000472521 361 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC009646.1-201ENST00000510455 318 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RNA5SP49-201ENST00000516450 115 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC068790.3-201ENST00000602988 553 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AL590099.1-201ENST00000615276 138 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AL021997.2-201ENST00000615674 271 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 AC007390.2-201ENST00000606229 3803 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNU6-181P-201ENST00000363225 107 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNA5SP175-201ENST00000364275 119 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNY4P16-201ENST00000364768 94 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNU1-13P-201ENST00000384499 162 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RPS12P5-201ENST00000423449 371 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC002486.1-201ENST00000435098 391 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RPS4XP4-201ENST00000443195 763 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 MTND1P12-201ENST00000455231 147 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 SNORD121B-201ENST00000458838 81 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC092989.1-201ENST00000481235 277 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC007182.2-201ENST00000489251 402 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 PGBD4P4-201ENST00000509673 613 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNA5SP446-201ENST00000515955 82 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RNU6-445P-201ENST00000516949 107 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 OR4P1P-201ENST00000530808 1136 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 OR8L1P-201ENST00000534005 955 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC068135.2-201ENST00000569293 1028 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AL355812.1-201ENST00000603215 216 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC022306.2-201ENST00000617563 647 ntBASIC4.51□□□□□ -1.69
TDP1Q9NUW8 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
TDP1Q9NUW8 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL592437.2-201ENST00000421655 2434 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL139811.1-201ENST00000424779 2299 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 Y_RNA.409-201ENST00000383990 98 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 RNU6-114P-201ENST00000384704 105 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR1250-201ENST00000408098 113 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR1277-201ENST00000408536 78 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 MIR1271-201ENST00000408537 86 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 RNA5SP56-201ENST00000410277 118 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AL157831.1-201ENST00000426134 473 ntBASIC4.5□□□□□ -1.69
TDP1Q9NUW8 AC006548.1-201ENST00000427470 102 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms