Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC044860.2-201ENST00000561005 179 ntBASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC007151.1-201ENST00000572774 483 ntBASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC011447.4-201ENST00000587562 111 ntBASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC113194.1-201ENST00000606037 500 ntBASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC011155.2-201ENST00000623202 216 ntBASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
PTCHD1Q96NR3 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.339-201ENST00000365325 102 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.378-201ENST00000365652 113 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RNU1-106P-201ENST00000384382 164 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RNY4P36-201ENST00000391116 96 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RNU4-14P-201ENST00000410858 122 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC093162.1-201ENST00000419682 124 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Z82205.1-201ENST00000428456 297 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 CEACAMP7-201ENST00000444105 496 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL031584.1-201ENST00000447169 754 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC097484.1-201ENST00000471148 389 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL049874.2-201ENST00000492636 288 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.682-201ENST00000516457 100 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RN7SKP260-201ENST00000516907 149 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Y_RNA.711-201ENST00000516993 102 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 RNU6-64P-201ENST00000517119 105 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC051619.2-201ENST00000559063 397 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 MIR3942-201ENST00000585264 109 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL592436.1-201ENST00000605135 558 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC245389.1-201ENST00000605141 529 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL080274.1-201ENST00000605565 220 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL390240.1-201ENST00000612950 384 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AP001486.3-201ENST00000615334 372 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AC037198.3-201ENST00000616754 526 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 AL359757.2-201ENST00000624309 274 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 MTND5P42-201ENST00000637720 498 ntBASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
PTCHD1Q96NR3 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.64
PTCHD1Q96NR3 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
PTCHD1Q96NR3 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
PTCHD1Q96NR3 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
PTCHD1Q96NR3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 AC093535.2-201ENST00000624769 2326 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RN7SKP44-201ENST00000363602 316 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 SNORA74A-201ENST00000364089 198 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 SNORA33.2-201ENST00000365413 134 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RNU5E-6P-201ENST00000365574 115 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 SNORD51-201ENST00000384320 80 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RPS4XP9-201ENST00000405151 780 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RNA5SP107-201ENST00000411358 122 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 VN1R36P-201ENST00000414936 291 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RPL12P34-201ENST00000424532 479 ntBASIC4.83□□□□□ -1.64
PTCHD1Q96NR3 RPS20P1-201ENST00000434853 354 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms