Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MIR16-2-201ENST00000362117 81 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 RNVU1-3-201ENST00000364313 161 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 RNU6-1005P-201ENST00000384519 107 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC012497.1-201ENST00000429392 575 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AL356320.1-201ENST00000429616 163 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 FCF1P6-201ENST00000456841 595 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC111193.1-201ENST00000504097 155 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC025918.2-201ENST00000558683 763 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC023043.3-201ENST00000593113 385 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AL136370.1-201ENST00000608166 691 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC253576.2-201ENST00000618815 580 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC073569.3-201ENST00000619055 682 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AP002371.2-201ENST00000624450 503 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
SHROOM3Q8TF72 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 RNU6-98P-201ENST00000384173 107 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 RNU6-481P-201ENST00000384194 107 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC008173.1-201ENST00000418901 264 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AL512661.1-201ENST00000434586 1253 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 UBE2V1P5-201ENST00000440070 405 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 RNF2P1-201ENST00000442955 1010 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC108729.2-201ENST00000476543 840 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 MTCO3P27-201ENST00000514397 196 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 MTND1P36-201ENST00000522384 936 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC128657.1-201ENST00000549459 145 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC068620.3-201ENST00000602749 560 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC110792.4-201ENST00000609843 298 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.56□□□□□ -2
SHROOM3Q8TF72 MIR8084-201ENST00000614105 89 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC073348.1-201ENST00000623002 331 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC097460.3-201ENST00000623099 442 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 AC097372.4-201ENST00000625025 466 ntBASIC2.56□□□□□ -2
SHROOM3Q8TF72 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 AP000526.1-201ENST00000603308 1388 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.55□□□□□ -2
SHROOM3Q8TF72 AC007390.1-201ENST00000415722 356 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 Z98742.3-201ENST00000418637 326 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 AL513175.2-201ENST00000422071 443 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.55□□□□□ -2
SHROOM3Q8TF72 FO393419.3-201ENST00000428741 282 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 USP9YP7-201ENST00000436723 430 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 AL353718.1-201ENST00000451028 517 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 USP9YP32-201ENST00000452432 430 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 AP000705.1-201ENST00000454567 350 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 SNRPGP5-201ENST00000456003 220 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 CFTRP1-201ENST00000456646 183 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.55□□□□□ -2
SHROOM3Q8TF72 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.55□□□□□ -2
SHROOM3Q8TF72 AC104229.1-201ENST00000561364 255 ntBASIC2.55□□□□□ -2
SHROOM3Q8TF72 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.55□□□□□ -2
SHROOM3Q8TF72 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.55□□□□□ -2
SHROOM3Q8TF72 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SHROOM3Q8TF72 SNORD115-48-201ENST00000364764 76 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC2.54□□□□□ -2
SHROOM3Q8TF72 RNU6-146P-201ENST00000384602 108 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 RNU4-74P-201ENST00000411280 161 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 AL606495.1-201ENST00000422100 813 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AC087385.1-201ENST00000475062 312 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 RPL21P47-201ENST00000483696 477 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 RPL36AP21-201ENST00000490372 323 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 AC112518.2-201ENST00000508565 425 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 UBTFL10-201ENST00000528532 562 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AL627309.6-201ENST00000606857 840 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 AL163051.2-201ENST00000618976 735 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 Z99129.2-201ENST00000619967 314 ntBASIC2.54□□□□□ -2
SHROOM3Q8TF72 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.54□□□□□ -2
SHROOM3Q8TF72 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SHROOM3Q8TF72 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
SHROOM3Q8TF72 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.54□□□□□ -2
SHROOM3Q8TF72 SNORA41-201ENST00000384675 132 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms