Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AP005019.3-201ENST00000620418 560 ntBASIC5.66□□□□□ -1.5
USP48Q86UV5 AL159972.1-201ENST00000625150 448 ntBASIC5.66□□□□□ -1.5
USP48Q86UV5 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP48Q86UV5 AL359893.1-201ENST00000447628 1580 ntBASIC5.66□□□□□ -1.5
USP48Q86UV5 LINC00622-201ENST00000562811 1570 ntBASIC5.66□□□□□ -1.5
USP48Q86UV5 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.66□□□□□ -1.5
USP48Q86UV5 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP48Q86UV5 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP48Q86UV5 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.66□□□□□ -1.5
USP48Q86UV5 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP48Q86UV5 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.65□□□□□ -1.5
USP48Q86UV5 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.65□□□□□ -1.5
USP48Q86UV5 PABPC1P7-201ENST00000413177 1513 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
USP48Q86UV5 AL022322.2-201ENST00000624072 20397 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC092326.2-201ENST00000624772 1561 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP48Q86UV5 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP48Q86UV5 RNU4-76P-201ENST00000364509 141 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RNU1-39P-201ENST00000383897 165 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 MT-TL1-201ENST00000386347 75 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RNA5SP296-201ENST00000410523 111 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL353193.1-201ENST00000421444 268 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC092832.1-201ENST00000422934 400 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC007283.2-201ENST00000424739 197 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL138785.1-201ENST00000425821 331 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RPS26P2-201ENST00000440331 348 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.65□□□□□ -1.5
USP48Q86UV5 USP9YP8-201ENST00000441913 500 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.65□□□□□ -1.5
USP48Q86UV5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.65□□□□□ -1.5
USP48Q86UV5 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.65□□□□□ -1.5
USP48Q86UV5 RPL21P126-201ENST00000470049 478 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL139099.1-201ENST00000497398 403 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.65□□□□□ -1.5
USP48Q86UV5 AC046134.1-201ENST00000514454 666 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RNU6-27P-201ENST00000516146 107 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RNU6-875P-201ENST00000516488 106 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 Y_RNA.719-201ENST00000517156 106 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 MIR2116-201ENST00000517221 80 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC022616.3-201ENST00000523940 148 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AP003072.2-201ENST00000527756 676 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC025884.1-201ENST00000556034 378 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL359212.1-201ENST00000556608 614 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 SNORA74C-1-201ENST00000580726 201 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC067852.4-201ENST00000590314 478 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 NRBF2P5-201ENST00000603087 788 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL162413.1-201ENST00000603198 110 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 OR6R2P-201ENST00000609216 300 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC093788.1-201ENST00000609356 927 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL590099.1-201ENST00000615276 138 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AL445567.2-201ENST00000618935 498 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC009033.1-201ENST00000624279 431 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC009161.2-201ENST00000624626 138 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.65□□□□□ -1.5
USP48Q86UV5 RNA5SP196-201ENST00000625967 102 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 AC010300.1-201ENST00000600671 5134 ntBASIC5.65□□□□□ -1.5
USP48Q86UV5 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.65□□□□□ -1.51
USP48Q86UV5 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.65□□□□□ -1.51
USP48Q86UV5 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
USP48Q86UV5 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.65□□□□□ -1.51
USP48Q86UV5 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP48Q86UV5 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.64□□□□□ -1.51
USP48Q86UV5 AC107068.1-201ENST00000563286 4218 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
USP48Q86UV5 SNORD51-201ENST00000384320 80 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 SNORD96B-201ENST00000386148 79 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 MT-TC-201ENST00000387405 66 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RNA5SP171-201ENST00000391071 115 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RPL7P60-201ENST00000397636 735 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 MIR1250-201ENST00000408098 113 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.64□□□□□ -1.51
USP48Q86UV5 JKAMPP1-201ENST00000413804 919 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 ZNF90P2-204ENST00000419323 1075 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AL356387.2-201ENST00000422272 243 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RPL7AP25-201ENST00000423357 805 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AL451062.2-201ENST00000427515 271 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 OR4C10P-201ENST00000434991 931 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.64□□□□□ -1.51
USP48Q86UV5 RPL7P54-201ENST00000438336 674 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC004938.1-201ENST00000438468 308 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 MRPL48P1-201ENST00000445390 636 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.64□□□□□ -1.51
USP48Q86UV5 SNORD121B-201ENST00000458838 81 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RPL37P6-202ENST00000464216 403 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RPL7P19-201ENST00000469948 618 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.64□□□□□ -1.51
USP48Q86UV5 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.64□□□□□ -1.51
USP48Q86UV5 MTCYBP18-201ENST00000501056 747 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms