Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AC112204.1-201ENST00000502591 103 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.87□□□□□ -1.63
KRT40Q6A162 AL592156.1-201ENST00000508758 304 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 AC008958.1-201ENST00000511047 682 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 SOD1P3-201ENST00000518682 454 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.87□□□□□ -1.63
KRT40Q6A162 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.87□□□□□ -1.63
KRT40Q6A162 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.87□□□□□ -1.63
KRT40Q6A162 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.87□□□□□ -1.63
KRT40Q6A162 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.87□□□□□ -1.63
KRT40Q6A162 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.87□□□□□ -1.63
KRT40Q6A162 HSPE1P3-201ENST00000559254 309 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 HNRNPCP4-201ENST00000571636 900 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 C8orf59P2-201ENST00000603441 271 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AC008277.2-201ENST00000605196 797 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AL590282.1-201ENST00000610379 1136 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 FAM27D1-201ENST00000612308 341 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 Y_RNA.804-201ENST00000615262 101 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AC104260.1-201ENST00000616660 539 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AC012150.2-201ENST00000621300 544 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 U6.101-201ENST00000637707 76 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
KRT40Q6A162 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 AC000123.3-201ENST00000624029 4975 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 AL354685.2-201ENST00000448218 1447 ntBASIC4.87□□□□□ -1.63
KRT40Q6A162 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
KRT40Q6A162 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
KRT40Q6A162 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC107081.3-201ENST00000612715 2034 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 Y_RNA.409-201ENST00000383990 98 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 MIR92A2-201ENST00000385299 75 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 MT-TL1-201ENST00000386347 75 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 ARF4P3-201ENST00000397387 509 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 PTMAP2-201ENST00000397627 327 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 RPS20P2-201ENST00000402520 389 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 MIR1179-201ENST00000408703 91 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 TPMTP2-201ENST00000414372 726 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 RPL7P2-201ENST00000427639 268 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 GOT2P5-201ENST00000433995 546 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 RPL23AP83-201ENST00000434984 473 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 RPL23AP89-201ENST00000439324 255 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 USP9YP8-201ENST00000441913 500 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 MTCO3P20-201ENST00000454926 688 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AC026410.2-201ENST00000460281 156 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 RPS29P25-201ENST00000481709 171 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 MTND1P3-201ENST00000484956 952 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC026726.1-201ENST00000512859 601 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AC034159.1-201ENST00000513885 583 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 Y_RNA.704-201ENST00000516851 102 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AL157394.1-201ENST00000562983 1224 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.86□□□□□ -1.63
KRT40Q6A162 FGF7P1-201ENST00000582820 288 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 BNIP3P9-201ENST00000603714 553 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AL161756.2-201ENST00000604597 246 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 MIR6867-201ENST00000610636 67 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC009237.17-201ENST00000618111 748 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 OR11H5P-202ENST00000641612 1325 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 CASC19-280ENST00000642102 1351 ntBASIC4.86□□□□□ -1.63
KRT40Q6A162 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.86□□□□□ -1.63
KRT40Q6A162 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.86□□□□□ -1.63
KRT40Q6A162 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
KRT40Q6A162 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.85□□□□□ -1.63
KRT40Q6A162 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
KRT40Q6A162 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.85□□□□□ -1.63
KRT40Q6A162 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
KRT40Q6A162 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
KRT40Q6A162 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
KRT40Q6A162 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
KRT40Q6A162 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms