Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 Y_RNA.157-201ENST00000363638 102 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNA5SP513-201ENST00000364648 118 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 SNORA73.2-201ENST00000364946 201 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 Y_RNA.431-201ENST00000384086 102 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNU6-952P-201ENST00000391164 108 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RPL23AP32-201ENST00000395315 459 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 OR9R1P-201ENST00000412200 877 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AL354751.2-201ENST00000415471 210 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 MRPL50P2-201ENST00000416821 482 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 PDCL2P1-201ENST00000419302 352 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RPL35AP12-201ENST00000425362 338 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 TAAR7P-201ENST00000436141 242 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AL136380.1-201ENST00000447970 162 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RPL21P71-201ENST00000465598 459 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.38□□□□□ -1.71
COL4A3Q01955 GMPSP1-201ENST00000514075 579 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AC099522.1-202ENST00000514718 367 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AL389895.1-201ENST00000554127 252 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC034105.3-201ENST00000565294 442 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC068790.5-201ENST00000602741 355 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.37□□□□□ -1.71
COL4A3Q01955 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 AL133243.3-201ENST00000617415 3004 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
COL4A3Q01955 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.37□□□□□ -1.71
COL4A3Q01955 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 RNA5SP432-201ENST00000362480 116 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 RN7SKP159-201ENST00000410657 292 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 MTATP6P18-201ENST00000417994 673 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 OR51AB1P-201ENST00000429046 620 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC007389.2-201ENST00000434630 306 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 PPIAP13-201ENST00000434706 478 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 RPS26P40-201ENST00000435209 294 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A3Q01955 RPL37P3-201ENST00000456825 293 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 DEFB109F-201ENST00000491870 277 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC108471.1-201ENST00000513977 287 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 RNU6-201P-201ENST00000517100 61 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A3Q01955 SUB1P2-201ENST00000556401 297 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC106782.4-201ENST00000568264 210 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC090312.1-201ENST00000580637 348 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC011468.4-201ENST00000603942 409 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 RMST_3.1-201ENST00000611651 109 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 DISC2.1-201ENST00000612827 205 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.37□□□□□ -1.71
COL4A3Q01955 uc_338.9-201ENST00000617424 182 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL4A3Q01955 AC005086.4-201ENST00000623065 213 ntBASIC4.37□□□□□ -1.71
COL4A3Q01955 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL4A3Q01955 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL4A3Q01955 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.37□□□□□ -1.71
COL4A3Q01955 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
COL4A3Q01955 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.36□□□□□ -1.71
COL4A3Q01955 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL4A3Q01955 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A3Q01955 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A3Q01955 RNU6-456P-201ENST00000384493 107 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 MIR7-3-201ENST00000384898 110 ntBASIC4.36□□□□□ -1.71
COL4A3Q01955 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL4A3Q01955 HMGB1P17-201ENST00000403495 628 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms