Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 RNA5SP124-201ENST00000362739 110 ntBASIC4.25□□□□□ -1.73
CIITAP33076 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 RNU6-1122P-201ENST00000384449 107 ntBASIC4.25□□□□□ -1.73
CIITAP33076 RNU6ATAC-201ENST00000408749 126 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC073264.1-201ENST00000411508 416 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.25□□□□□ -1.73
CIITAP33076 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.25□□□□□ -1.73
CIITAP33076 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 RPS3AP44-201ENST00000425466 790 ntBASIC4.25□□□□□ -1.73
CIITAP33076 RPL36P19-201ENST00000430744 301 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.25□□□□□ -1.73
CIITAP33076 BMS1P19-201ENST00000433925 393 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL356535.1-201ENST00000440335 398 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL590399.6-201ENST00000446396 307 ntBASIC4.25□□□□□ -1.73
CIITAP33076 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.25□□□□□ -1.73
CIITAP33076 TRBV12-2-201ENST00000489763 344 ntBASIC4.25□□□□□ -1.73
CIITAP33076 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.25□□□□□ -1.73
CIITAP33076 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.25□□□□□ -1.73
CIITAP33076 RNU4-60P-201ENST00000517239 135 ntBASIC4.25□□□□□ -1.73
CIITAP33076 IGHV3-32-201ENST00000519182 355 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.25□□□□□ -1.73
CIITAP33076 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.25□□□□□ -1.73
CIITAP33076 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 MED28P5-201ENST00000528254 438 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL139174.1-201ENST00000531489 886 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 CBX3P5-201ENST00000552017 521 ntBASIC4.25□□□□□ -1.73
CIITAP33076 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.25□□□□□ -1.73
CIITAP33076 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 AC012065.4-201ENST00000602445 679 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL136363.2-201ENST00000604173 851 ntBASIC4.25□□□□□ -1.73
CIITAP33076 HSPE1P14-201ENST00000605812 302 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.25□□□□□ -1.73
CIITAP33076 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 AC073968.1-201ENST00000618594 637 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AC099842.1-201ENST00000619919 596 ntBASIC4.25□□□□□ -1.73
CIITAP33076 AL590240.3-201ENST00000621416 943 ntBASIC4.25□□□□□ -1.73
CIITAP33076 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.25□□□□□ -1.73
CIITAP33076 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 MTND4P4-201ENST00000439033 1366 ntBASIC4.25□□□□□ -1.73
CIITAP33076 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CIITAP33076 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CIITAP33076 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.24□□□□□ -1.73
CIITAP33076 OR4G11P-202ENST00000642116 1414 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.24□□□□□ -1.73
CIITAP33076 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.24□□□□□ -1.73
CIITAP33076 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CIITAP33076 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
CIITAP33076 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.24□□□□□ -1.73
CIITAP33076 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 RNU6-723P-201ENST00000383973 107 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RNU6-441P-201ENST00000384545 106 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RNA5SP424-201ENST00000390988 115 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RPL7P60-201ENST00000397636 735 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL590704.1-201ENST00000402856 794 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RNU2-28P-201ENST00000410457 189 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL663109.1-201ENST00000411498 844 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RAB9AP3-201ENST00000412737 573 ntBASIC4.24□□□□□ -1.73
CIITAP33076 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 AF274854.1-201ENST00000413236 615 ntBASIC4.24□□□□□ -1.73
CIITAP33076 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 ZYG11AP1-201ENST00000430329 837 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL365184.2-201ENST00000431139 435 ntBASIC4.24□□□□□ -1.73
CIITAP33076 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.24□□□□□ -1.73
CIITAP33076 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 MTND1P28-201ENST00000435623 950 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.24□□□□□ -1.73
CIITAP33076 AL031667.1-201ENST00000440222 725 ntBASIC4.24□□□□□ -1.73
CIITAP33076 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.24□□□□□ -1.73
CIITAP33076 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 AL592447.1-201ENST00000447592 540 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AL133547.1-201ENST00000448546 220 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RAB9AP1-201ENST00000449393 573 ntBASIC4.24□□□□□ -1.73
CIITAP33076 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 TPT1P7-201ENST00000458300 517 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AC011825.1-201ENST00000484967 388 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AC069499.1-201ENST00000489433 509 ntBASIC4.24□□□□□ -1.73
CIITAP33076 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
CIITAP33076 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 AC016065.2-201ENST00000514530 444 ntBASIC4.24□□□□□ -1.73
CIITAP33076 RNU6-720P-201ENST00000516363 108 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.24□□□□□ -1.73
CIITAP33076 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.24□□□□□ -1.73
CIITAP33076 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.24□□□□□ -1.73
CIITAP33076 AC006960.3-201ENST00000561845 705 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.24□□□□□ -1.73
CIITAP33076 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.24□□□□□ -1.73
CIITAP33076 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms