Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 H3F3AP1-201ENST00000559984 334 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC087465.1-201ENST00000560574 245 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 MIR4458-201ENST00000578872 75 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXC9P31274 SNORD39.3-201ENST00000584451 71 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AL031281.1-201ENST00000604049 488 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AL034351.1-201ENST00000605288 668 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC9P31274 MIR6864-201ENST00000617935 70 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 AC131159.1-201ENST00000621854 213 ntBASIC4.17□□□□□ -1.74
HOXC9P31274 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC9P31274 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 SNORA71.1-201ENST00000364523 117 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXC9P31274 RNU6-657P-201ENST00000383904 107 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 RNU6-1279P-201ENST00000383917 103 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 RNU6-921P-201ENST00000384361 107 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 SNORD67-201ENST00000390833 111 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 NUP35P2-201ENST00000416748 943 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 AC108734.1-201ENST00000439549 399 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 MRPS31P2-201ENST00000451581 518 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 RPL7P18-201ENST00000478965 734 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC013828.1-201ENST00000481845 158 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC018797.3-201ENST00000513388 1241 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 RNU6-1261P-201ENST00000517194 104 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 MTND2P26-201ENST00000528255 1029 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC9P31274 AP003461.1-201ENST00000528866 78 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXC9P31274 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXC9P31274 OR4K7P-201ENST00000580232 945 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC009220.3-201ENST00000604318 586 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 DPRXP5-201ENST00000604662 539 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXC9P31274 LINC00901.1-201ENST00000617252 152 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 AC026634.1-201ENST00000634369 198 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 MIR6715B-201ENST00000637172 77 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 MTND2P41-201ENST00000637599 773 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 AC007529.1-201ENST00000418574 2178 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
HOXC9P31274 AL079305.1-201ENST00000623159 3008 ntBASIC4.16□□□□□ -1.74
HOXC9P31274 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXC9P31274 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
HOXC9P31274 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
HOXC9P31274 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 Y_RNA.25-201ENST00000362528 102 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 RNU6-7-201ENST00000364784 107 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 RNU6-8-201ENST00000365467 107 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 RNU6-441P-201ENST00000384545 106 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 SNORD15B-201ENST00000384714 146 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 AC004987.3-201ENST00000413879 771 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC241584.1-201ENST00000438469 1241 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 Z99127.3-201ENST00000448158 395 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC9P31274 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC087879.1-201ENST00000474343 374 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 AC113430.1-201ENST00000506872 718 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 TGIF1P1-201ENST00000558095 802 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 AC034105.3-201ENST00000565294 442 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXC9P31274 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXC9P31274 AC113194.1-201ENST00000606037 500 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC9P31274 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXC9P31274 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 AC005539.1-201ENST00000443768 1479 ntBASIC4.15□□□□□ -1.75
HOXC9P31274 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXC9P31274 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXC9P31274 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC9P31274 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC9P31274 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC9P31274 Y_RNA.311-201ENST00000365068 96 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXC9P31274 RNU2-28P-201ENST00000410457 189 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AC068533.2-201ENST00000411872 306 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 RPS15AP40-201ENST00000419621 391 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 PTP4A1P5-201ENST00000420305 455 ntBASIC4.14□□□□□ -1.75
HOXC9P31274 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXC9P31274 RWDD4P2-201ENST00000426392 563 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms