Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CLDN9O95484 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.04□□□□□ -1.92
CLDN9O95484 BX510359.1-201ENST00000456973 237 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC093278.1-201ENST00000494700 600 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC006390.1-201ENST00000508068 283 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 KLHL2P1-201ENST00000508691 521 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC104417.1-201ENST00000523974 751 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN9O95484 AP003066.2-201ENST00000529375 555 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.04□□□□□ -1.92
CLDN9O95484 AL163153.1-201ENST00000554223 283 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 MIR4474-201ENST00000579189 78 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 MIR3200-201ENST00000580767 85 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 AP001029.3-201ENST00000588063 596 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.04□□□□□ -1.92
CLDN9O95484 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.04□□□□□ -1.92
CLDN9O95484 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.04□□□□□ -1.92
CLDN9O95484 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.04□□□□□ -1.92
CLDN9O95484 AL355810.1-201ENST00000614629 552 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 AC231759.1-201ENST00000616455 597 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 CYP3A51P-201ENST00000633513 256 ntBASIC3.04□□□□□ -1.92
CLDN9O95484 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CLDN9O95484 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLDN9O95484 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLDN9O95484 SNORA46-201ENST00000384762 135 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC110754.1-201ENST00000399740 601 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL035405.1-201ENST00000400795 710 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL357075.1-201ENST00000404107 726 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC245054.2-201ENST00000415639 319 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC099677.1-201ENST00000420575 175 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL353705.1-201ENST00000433468 480 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 HIGD1AP11-201ENST00000438361 280 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 HMGN1P5-201ENST00000448591 263 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL445669.2-201ENST00000454425 421 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 RPL23AP31-201ENST00000456160 467 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLDN9O95484 AC008837.1-201ENST00000511513 412 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 RNU6-467P-201ENST00000517027 110 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 TRAV37-201ENST00000553906 342 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 OR4T1P-201ENST00000554933 911 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.03□□□□□ -1.92
CLDN9O95484 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.03□□□□□ -1.92
CLDN9O95484 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 LARP7P2-201ENST00000575306 125 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 COX6CP3-201ENST00000580869 223 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.03□□□□□ -1.92
CLDN9O95484 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC010738.1-201ENST00000604970 987 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC091946.2-201ENST00000606105 291 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.03□□□□□ -1.92
CLDN9O95484 VIS1.1-201ENST00000610517 203 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.03□□□□□ -1.92
CLDN9O95484 AC087821.2-201ENST00000637086 450 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
CLDN9O95484 SGO1P2-201ENST00000429458 1589 ntBASIC3.03□□□□□ -1.92
CLDN9O95484 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.02□□□□□ -1.93
CLDN9O95484 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CLDN9O95484 OR5H2-201ENST00000355273 945 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CLDN9O95484 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 SNORA40.4-201ENST00000390971 128 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 RNU6-1300P-201ENST00000391046 108 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 RPL21P3-201ENST00000395517 478 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 ARF4P3-201ENST00000397387 509 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 RNU2-15P-201ENST00000410692 191 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.02□□□□□ -1.93
CLDN9O95484 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CLDN9O95484 TRIAP1P1-201ENST00000427062 225 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 MTND4LP10-201ENST00000435146 291 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.02□□□□□ -1.93
CLDN9O95484 ARF4P4-201ENST00000439608 520 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.02□□□□□ -1.93
CLDN9O95484 RPL17P49-201ENST00000443728 411 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 UQCRHP3-201ENST00000451503 251 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 AC146507.2-201ENST00000460608 476 ntBASIC3.02□□□□□ -1.93
CLDN9O95484 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms