Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 AP001207.2-201ENST00000519490 539 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CLDN3O15551 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.41□□□□□ -1.86
CLDN3O15551 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CLDN3O15551 MIR4474-201ENST00000579189 78 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 AL109653.1-201ENST00000603091 248 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC080188.3-201ENST00000624842 748 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC091925.2-201ENST00000625059 256 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC087821.2-201ENST00000637086 450 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CLDN3O15551 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
CLDN3O15551 AL079305.1-201ENST00000623159 3008 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CLDN3O15551 MTCO1P23-201ENST00000415223 1526 ntBASIC3.4□□□□□ -1.86
CLDN3O15551 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLDN3O15551 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLDN3O15551 SNORA40.4-201ENST00000390971 128 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RNU6-1300P-201ENST00000391046 108 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC069282.1-201ENST00000411911 526 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AL024507.1-201ENST00000412741 274 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC109780.2-201ENST00000413467 845 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.4□□□□□ -1.87
CLDN3O15551 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RPL23AP69-201ENST00000431134 458 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 MTND4LP10-201ENST00000435146 291 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RPL17P49-201ENST00000443728 411 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AL671855.1-201ENST00000446875 1203 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RPL23AP31-201ENST00000456160 467 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLDN3O15551 TXNP6-201ENST00000510190 310 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC008837.1-201ENST00000511513 412 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC105914.1-201ENST00000511798 226 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RNA5SP217-201ENST00000515959 91 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC068657.1-201ENST00000520807 306 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AP003066.2-201ENST00000529375 555 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 MIR3200-201ENST00000580767 85 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC008507.2-201ENST00000588402 1176 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 AL445435.1-201ENST00000604232 665 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CLDN3O15551 AC099778.2-201ENST00000610904 211 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.4□□□□□ -1.87
CLDN3O15551 AL355810.1-201ENST00000614629 552 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 AC110774.1-201ENST00000623567 2018 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.4□□□□□ -1.87
CLDN3O15551 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CLDN3O15551 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CLDN3O15551 ZNF542P-204ENST00000482727 1305 ntBASIC3.4□□□□□ -1.87
CLDN3O15551 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
CLDN3O15551 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLDN3O15551 MAPK10-362ENST00000641864 4484 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN3O15551 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLDN3O15551 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CLDN3O15551 SGO1P2-201ENST00000429458 1589 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN3O15551 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLDN3O15551 MIR148B-201ENST00000362252 99 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 U3.11-201ENST00000364476 212 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 RNU2-15P-201ENST00000410692 191 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.39□□□□□ -1.87
CLDN3O15551 RPL32P35-201ENST00000415214 394 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AC099677.1-201ENST00000420575 175 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 DPRXP1-201ENST00000426312 460 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 ARF4P4-201ENST00000439608 520 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC016696.1-201ENST00000446949 318 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN3O15551 AP001992.1-205ENST00000462248 379 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 RPS27P29-201ENST00000463110 252 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 ST13P14-201ENST00000474095 734 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC026412.2-201ENST00000512270 1075 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN3O15551 AP001189.2-201ENST00000527320 189 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC068339.2-201ENST00000534395 618 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 COX6CP3-201ENST00000580869 223 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN3O15551 AC010738.1-201ENST00000604970 987 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 AC091946.2-201ENST00000606105 291 ntBASIC3.39□□□□□ -1.87
CLDN3O15551 VIS1.1-201ENST00000610517 203 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms