Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 MIR3118-1-201ENST00000581787 76 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC073648.5-201ENST00000603502 305 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL161756.2-201ENST00000604597 246 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC012443.1-201ENST00000605605 231 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC020634.1-201ENST00000608701 549 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL391813.2-201ENST00000609113 322 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AC072046.2-201ENST00000618366 268 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 AL603758.1-201ENST00000618654 241 ntBASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC9Q9Y3X0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 OR5P1P-201ENST00000299512 925 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 U8.3-201ENST00000363321 132 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC097374.1-203ENST00000400783 485 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 ERMN-204ENST00000409925 556 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RNU2-62P-201ENST00000410868 191 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 ELOCP17-201ENST00000414751 326 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC079809.1-201ENST00000415468 276 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RPS15AP12-201ENST00000419498 388 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 USP9YP14-201ENST00000430663 563 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AL138799.3-201ENST00000438968 350 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC245028.2-201ENST00000458673 253 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RN7SL517P-201ENST00000462240 305 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 ENPP7P11-201ENST00000505915 627 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 CDC42P4-201ENST00000510507 563 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC107934.1-201ENST00000522215 217 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 VN1R79P-201ENST00000593540 513 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC078795.2-201ENST00000602835 1252 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 NDUFA8P1-201ENST00000605525 367 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC245517.5-201ENST00000611529 162 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 AC091953.5-201ENST00000622919 233 ntBASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC9Q9Y3X0 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LARP1BP1-201ENST00000506036 1359 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 ZFRP1-201ENST00000457579 2970 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 BBX-203ENST00000402543 3980 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 RNU5E-8P-201ENST00000363502 116 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 RPS3AP36-201ENST00000398190 775 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AL109755.1-201ENST00000401791 649 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 RNU6ATAC-201ENST00000408749 126 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 UBE2FP1-201ENST00000416536 447 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 YME1L1P1-201ENST00000429435 297 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC007389.2-201ENST00000434630 306 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC024082.2-201ENST00000434771 238 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC090774.1-201ENST00000435925 246 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 RPS24P1-201ENST00000438550 371 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AL031667.1-201ENST00000440222 725 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 USP9YP15-201ENST00000442391 422 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 ELOCP30-201ENST00000447108 299 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 BNIP3P41-201ENST00000503774 571 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC026726.1-201ENST00000512859 601 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LSM3P2-201ENST00000551246 273 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 TVP23BP1-201ENST00000557500 617 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AP001330.4-201ENST00000604350 154 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC008277.2-201ENST00000605196 797 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC018695.5-201ENST00000605872 315 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC098614.4-201ENST00000607601 462 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 MIR6867-201ENST00000610636 67 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 AC091304.9-201ENST00000612091 226 ntBASIC6.06□□□□□ -1.44
CCDC9Q9Y3X0 Z99129.1-201ENST00000612510 255 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms