Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC127537.2-201ENST00000439258 465 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL356535.1-201ENST00000440335 398 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 RPS4XP4-201ENST00000443195 763 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 FAM103A2P-201ENST00000444122 354 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 IFNWP4-201ENST00000453148 294 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 FABP3P2-201ENST00000453169 399 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 snoU13.8-201ENST00000458890 104 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 HMGB1P36-201ENST00000487709 576 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC069499.1-201ENST00000489433 509 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 RN7SL604P-201ENST00000492589 296 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL358832.1-201ENST00000497800 389 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC105252.1-201ENST00000503089 286 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC016957.1-201ENST00000534895 309 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 RPL21P5-201ENST00000554662 472 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AL161713.1-201ENST00000555538 145 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC068790.4-201ENST00000602474 263 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 YWHAQP7-201ENST00000603536 658 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC073534.2-201ENST00000620377 381 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 FARSBP1-201ENST00000435808 1778 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 AC007390.2-201ENST00000606229 3803 ntBASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
LIMCH1Q9UPQ0 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 Z73965.1-201ENST00000623412 2297 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 IPO8P1-201ENST00000455509 3109 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 MTND5P26-201ENST00000426018 1752 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 FRG1BP-201ENST00000278882 761 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RNU6-853P-201ENST00000364306 107 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 HSPD1P16-201ENST00000402302 394 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AL356421.1-201ENST00000403255 413 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RPL37P18-201ENST00000411602 243 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC004987.3-201ENST00000413879 771 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 MTCYBP5-201ENST00000423752 1135 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC007742.1-201ENST00000425789 329 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 PSMA2P3-201ENST00000429685 675 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 ELOCP26-201ENST00000436067 329 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 DNAJC19P4-201ENST00000440115 345 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 MTCO2P3-201ENST00000442543 421 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RPL7P52-201ENST00000449200 742 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RPL38P1-201ENST00000460914 211 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC126182.1-201ENST00000478134 357 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RPS27AP13-201ENST00000498403 237 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RNU6-714P-201ENST00000516963 103 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 ZNF519P2-201ENST00000557032 169 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 RBM11P1-201ENST00000604951 799 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 MIR8059-201ENST00000620427 81 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AL139811.1-201ENST00000424779 2299 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 AC018529.3-201ENST00000624212 2254 ntBASIC4.74□□□□□ -1.65
LIMCH1Q9UPQ0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
LIMCH1Q9UPQ0 PABPC1P7-201ENST00000413177 1513 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms