Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HLA-CQ95604 AC027229.1-201ENST00000583887 253 ntBASIC6.19□□□□□ -1.42
HLA-CQ95604 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 AC010900.2-201ENST00000604508 210 ntBASIC6.19□□□□□ -1.42
HLA-CQ95604 AL139099.4-201ENST00000614802 114 ntBASIC6.19□□□□□ -1.42
HLA-CQ95604 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.19□□□□□ -1.42
HLA-CQ95604 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 ZNF299P-201ENST00000406845 1804 ntBASIC6.19□□□□□ -1.42
HLA-CQ95604 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
HLA-CQ95604 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HLA-CQ95604 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.19□□□□□ -1.42
HLA-CQ95604 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HLA-CQ95604 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
HLA-CQ95604 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.19□□□□□ -1.42
HLA-CQ95604 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
HLA-CQ95604 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 Y_RNA.27-201ENST00000362540 103 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 Y_RNA.48-201ENST00000362710 103 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RNU6-125P-201ENST00000384505 107 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RNU6-14P-201ENST00000384630 106 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
HLA-CQ95604 RNU6-821P-201ENST00000390995 107 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6.18□□□□□ -1.42
HLA-CQ95604 U3.35-201ENST00000408405 208 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 Y_RNA.592-201ENST00000410274 109 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC239809.1-201ENST00000450470 217 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RN7SL51P-201ENST00000468230 285 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 HMGB1P25-201ENST00000468402 607 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RPS29P22-201ENST00000472363 168 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC007686.1-201ENST00000488511 463 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC095057.1-201ENST00000507583 168 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AC067942.3-201ENST00000512025 362 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AC005798.1-201ENST00000513715 387 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RNU6-390P-201ENST00000516259 103 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RNU6-255P-201ENST00000516957 105 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 RN7SKP258-201ENST00000517151 304 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC127381.1-201ENST00000555979 939 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.18□□□□□ -1.42
HLA-CQ95604 MIR1244-1-201ENST00000612829 85 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AC116447.1-201ENST00000613153 453 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AL138960.1-201ENST00000613838 513 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC6.18□□□□□ -1.42
HLA-CQ95604 MIR1244-3-201ENST00000635744 85 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 MIR1244-2-201ENST00000636449 85 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 MIR1244-4-202ENST00000636813 85 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AC073869.10-201ENST00000642016 354 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 AP000560.1-201ENST00000624150 1937 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.18□□□□□ -1.42
HLA-CQ95604 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
HLA-CQ95604 AC105235.1-201ENST00000623208 1816 ntBASIC6.18□□□□□ -1.42
HLA-CQ95604 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
HLA-CQ95604 MAPK10-287ENST00000641217 3037 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 AOX3P-204ENST00000491025 2107 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
HLA-CQ95604 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
HLA-CQ95604 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.17□□□□□ -1.42
HLA-CQ95604 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
HLA-CQ95604 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.17□□□□□ -1.42
HLA-CQ95604 RPL23P2-201ENST00000320371 421 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 Y_RNA.65-201ENST00000362846 100 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 RNU6-1159P-201ENST00000362933 107 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 RNU6-1317P-201ENST00000364582 104 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 MIR1298-201ENST00000408783 112 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 RNU6-130P-201ENST00000411112 103 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 RNU6-325P-201ENST00000411132 105 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 RNU6-607P-201ENST00000411283 108 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 AC016397.1-201ENST00000412463 242 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC6.17□□□□□ -1.42
HLA-CQ95604 AC099677.1-201ENST00000420575 175 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.17□□□□□ -1.42
HLA-CQ95604 FRG2FP-204ENST00000453982 852 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 VN1R105P-201ENST00000486595 910 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.17□□□□□ -1.42
HLA-CQ95604 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC6.17□□□□□ -1.42
HLA-CQ95604 RN7SKP82-201ENST00000516786 223 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 IGLV3-30-201ENST00000524362 298 ntBASIC6.17□□□□□ -1.42
HLA-CQ95604 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms