Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 OR14L1P-202ENST00000641545 3009 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC083843.3-201ENST00000623679 2186 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 GNG5P1-201ENST00000255500 204 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RNU6-984P-201ENST00000363236 109 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 SNORA63C-201ENST00000364578 129 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 MIR606-201ENST00000384851 96 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 MIR506-201ENST00000384998 124 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AL122016.1-201ENST00000403365 367 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AP000580.1-201ENST00000404439 358 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AL356387.2-201ENST00000422272 243 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RPL7P57-201ENST00000423238 740 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RGS17P1-201ENST00000423358 553 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 EIF1P3-201ENST00000423841 334 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC133104.1-201ENST00000429100 218 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RPL7P4-203ENST00000430239 730 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 SKP1P1-201ENST00000438081 489 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RPL7P54-201ENST00000438336 674 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 HMGB3P12-201ENST00000438745 556 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC079168.2-201ENST00000453977 416 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 MTND1P12-201ENST00000455231 147 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 CYCSP34-201ENST00000458172 304 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC091153.1-201ENST00000466297 402 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RN7SL303P-201ENST00000469773 251 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 SLC25A15P5-201ENST00000508033 253 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.7□□□□□ -1.66
USP39Q53GS9 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 Y_RNA.672-201ENST00000516289 104 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RNU6-445P-201ENST00000516949 107 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AP005597.4-201ENST00000526762 229 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC011611.1-201ENST00000552179 197 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.7□□□□□ -1.66
USP39Q53GS9 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC022884.3-201ENST00000579571 248 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC233702.9-201ENST00000581528 203 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC110743.1-201ENST00000584870 478 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 CKS1BP3-201ENST00000600888 237 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 RNF138P2-201ENST00000603490 592 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC090948.1-201ENST00000607464 549 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC023509.5-201ENST00000617434 807 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 AC008121.3-201ENST00000618726 433 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
USP39Q53GS9 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 AC046144.1-201ENST00000478559 1853 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
USP39Q53GS9 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 SCN1A-220ENST00000641603 12506 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.7□□□□□ -1.66
USP39Q53GS9 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP39Q53GS9 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
USP39Q53GS9 SALL4P2-201ENST00000423288 2910 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
USP39Q53GS9 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
USP39Q53GS9 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
USP39Q53GS9 OR5J1P-201ENST00000313544 939 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RNU6-1322P-201ENST00000364309 107 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 RNU1-39P-201ENST00000383897 165 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RNU6-769P-201ENST00000384407 104 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 SNORA70C-201ENST00000384538 135 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC009965.2-201ENST00000425328 970 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC011998.1-201ENST00000433403 117 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 RPS7P5-201ENST00000441482 581 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 MRPL50P4-201ENST00000446432 475 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RPS27AP15-201ENST00000447672 466 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC097493.1-201ENST00000463958 372 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RPL7AP28-201ENST00000464513 571 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
USP39Q53GS9 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 RNU6-150P-201ENST00000516237 95 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RNU6-835P-201ENST00000516974 104 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 MIR2116-201ENST00000517221 80 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.69□□□□□ -1.66
USP39Q53GS9 AC243972.3-201ENST00000539655 198 ntBASIC4.69□□□□□ -1.66
USP39Q53GS9 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms