Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 RN7SKP27-201ENST00000410684 333 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC092447.6-201ENST00000414578 210 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC063979.1-201ENST00000415539 377 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC069157.1-201ENST00000421749 137 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 RPF2P1-201ENST00000424137 906 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 OR2B8P-201ENST00000432841 938 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC005019.1-201ENST00000436455 431 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC079776.3-201ENST00000450665 370 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 RPS23P3-201ENST00000470993 430 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 HMGN2P13-201ENST00000476476 274 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 RN7SL293P-201ENST00000481765 281 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 CAB39P1-201ENST00000502277 460 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 MTND4LP22-201ENST00000508209 276 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 EEF1B2P4-201ENST00000551398 348 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC012669.1-201ENST00000603209 283 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC068831.7-201ENST00000616954 363 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC006133.1-201ENST00000617106 264 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC010975.3-201ENST00000618727 978 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AL590240.3-201ENST00000621416 943 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC091925.2-201ENST00000625059 256 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 CYP3A51P-201ENST00000633513 256 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 AC008264.2-201ENST00000610193 3731 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 Z99496.1-201ENST00000469424 1477 ntBASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC40Q4G0X9 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 RNU1-33P-201ENST00000364249 162 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 RNU6-298P-201ENST00000390888 96 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC007899.1-201ENST00000412776 775 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC012497.1-201ENST00000429392 575 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 TRIM60P18-201ENST00000441518 828 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC112492.1-201ENST00000449607 712 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC008155.2-201ENST00000464337 397 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC096751.1-202ENST00000502691 1067 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AP003102.1-201ENST00000525638 661 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AP001189.2-201ENST00000527320 189 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AP000619.3-201ENST00000535634 1127 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 NCAPGP2-201ENST00000557911 754 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC138915.2-201ENST00000569776 97 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 BNIP3P31-201ENST00000604515 566 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AC245389.1-201ENST00000605141 529 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 AP003485.1-201ENST00000625093 753 ntBASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC40Q4G0X9 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MTCO1P12-201ENST00000414273 1543 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 Y_RNA.578-201ENST00000390903 88 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 RPL21P3-201ENST00000395517 478 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 ATP5F1P3-201ENST00000397213 657 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MTND4P3-201ENST00000417829 541 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC079780.1-201ENST00000428259 207 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC011242.1-201ENST00000433596 1158 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 VN1R10P-201ENST00000447106 875 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 MTND2P19-201ENST00000449129 1012 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC146507.2-201ENST00000460608 476 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AL049829.1-201ENST00000465411 156 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC092757.1-201ENST00000467293 467 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 ST13P14-201ENST00000474095 734 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC105914.1-201ENST00000511798 226 ntBASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC40Q4G0X9 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms