Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC073348.1-201ENST00000623002 331 ntBASIC2.68□□□□□ -1.98
NUP98P52948 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 RPS3AP26-201ENST00000398259 784 ntBASIC2.68□□□□□ -1.98
NUP98P52948 RPL30P3-201ENST00000424262 333 ntBASIC2.68□□□□□ -1.98
NUP98P52948 AL603825.1-201ENST00000438481 80 ntBASIC2.68□□□□□ -1.98
NUP98P52948 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.68□□□□□ -1.98
NUP98P52948 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.68□□□□□ -1.98
NUP98P52948 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.68□□□□□ -1.98
NUP98P52948 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.68□□□□□ -1.98
NUP98P52948 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.68□□□□□ -1.98
NUP98P52948 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.68□□□□□ -1.98
NUP98P52948 AC099063.3-201ENST00000642066 185 ntBASIC2.68□□□□□ -1.98
NUP98P52948 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NUP98P52948 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
NUP98P52948 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
NUP98P52948 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC2.67□□□□□ -1.98
NUP98P52948 AL031736.2-201ENST00000426573 787 ntBASIC2.67□□□□□ -1.98
NUP98P52948 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC2.67□□□□□ -1.98
NUP98P52948 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.67□□□□□ -1.98
NUP98P52948 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.67□□□□□ -1.98
NUP98P52948 AP000705.1-201ENST00000454567 350 ntBASIC2.67□□□□□ -1.98
NUP98P52948 HMGN2P23-201ENST00000456759 269 ntBASIC2.67□□□□□ -1.98
NUP98P52948 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.67□□□□□ -1.98
NUP98P52948 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.67□□□□□ -1.98
NUP98P52948 AC092159.4-201ENST00000624944 550 ntBASIC2.67□□□□□ -1.98
NUP98P52948 PISRT1-201ENST00000626175 531 ntBASIC2.67□□□□□ -1.98
NUP98P52948 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
NUP98P52948 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.67□□□□□ -1.98
NUP98P52948 RNU6-673P-201ENST00000365084 104 ntBASIC2.66□□□□□ -1.98
NUP98P52948 RNA5SP167-201ENST00000365461 116 ntBASIC2.66□□□□□ -1.98
NUP98P52948 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NUP98P52948 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
NUP98P52948 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.66□□□□□ -1.98
NUP98P52948 AC240504.1-201ENST00000395709 845 ntBASIC2.66□□□□□ -1.98
NUP98P52948 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.66□□□□□ -1.98
NUP98P52948 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.66□□□□□ -1.98
NUP98P52948 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.66□□□□□ -1.98
NUP98P52948 AC018630.1-201ENST00000541376 925 ntBASIC2.66□□□□□ -1.98
NUP98P52948 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.66□□□□□ -1.98
NUP98P52948 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
NUP98P52948 AC244517.12-201ENST00000623581 663 ntBASIC2.66□□□□□ -1.98
NUP98P52948 MIR4278-201ENST00000636094 69 ntBASIC2.66□□□□□ -1.98
NUP98P52948 AL161431.1-201ENST00000618966 4205 ntBASIC2.66□□□□□ -1.98
NUP98P52948 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
NUP98P52948 RNU6-328P-201ENST00000390887 106 ntBASIC2.65□□□□□ -1.98
NUP98P52948 SNORA17.3-201ENST00000391159 129 ntBASIC2.65□□□□□ -1.98
NUP98P52948 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.65□□□□□ -1.98
NUP98P52948 ELOCP6-201ENST00000429066 328 ntBASIC2.65□□□□□ -1.98
NUP98P52948 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.65□□□□□ -1.98
NUP98P52948 AC004866.2-201ENST00000438285 481 ntBASIC2.65□□□□□ -1.98
NUP98P52948 ELOCP12-201ENST00000458706 328 ntBASIC2.65□□□□□ -1.98
NUP98P52948 AC116337.1-201ENST00000509680 687 ntBASIC2.65□□□□□ -1.98
NUP98P52948 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.65□□□□□ -1.98
NUP98P52948 MTCYBP28-201ENST00000566728 1132 ntBASIC2.65□□□□□ -1.98
NUP98P52948 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.65□□□□□ -1.98
NUP98P52948 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.65□□□□□ -1.98
NUP98P52948 AC093591.3-201ENST00000634516 308 ntBASIC2.65□□□□□ -1.98
NUP98P52948 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
NUP98P52948 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
NUP98P52948 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.65□□□□□ -1.99
NUP98P52948 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.65□□□□□ -1.99
NUP98P52948 RNA5SP498-201ENST00000411342 120 ntBASIC2.65□□□□□ -1.99
NUP98P52948 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC2.65□□□□□ -1.99
NUP98P52948 USP9YP8-201ENST00000441913 500 ntBASIC2.65□□□□□ -1.99
NUP98P52948 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.65□□□□□ -1.99
NUP98P52948 AC008571.1-201ENST00000467232 300 ntBASIC2.65□□□□□ -1.99
NUP98P52948 AC072039.1-201ENST00000477611 581 ntBASIC2.65□□□□□ -1.99
NUP98P52948 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.65□□□□□ -1.99
NUP98P52948 AC121761.2-201ENST00000617300 689 ntBASIC2.65□□□□□ -1.99
NUP98P52948 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.65□□□□□ -1.99
NUP98P52948 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
NUP98P52948 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.64□□□□□ -1.99
NUP98P52948 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
NUP98P52948 DCAF13P3-201ENST00000561147 1334 ntBASIC2.64□□□□□ -1.99
NUP98P52948 SNORA67.3-201ENST00000384366 140 ntBASIC2.64□□□□□ -1.99
NUP98P52948 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.64□□□□□ -1.99
NUP98P52948 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
NUP98P52948 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.64□□□□□ -1.99
NUP98P52948 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
NUP98P52948 AP004242.1-201ENST00000533701 349 ntBASIC2.64□□□□□ -1.99
NUP98P52948 OR4H12P-201ENST00000556269 907 ntBASIC2.64□□□□□ -1.99
NUP98P52948 MIR4506-201ENST00000584693 77 ntBASIC2.64□□□□□ -1.99
NUP98P52948 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.64□□□□□ -1.99
NUP98P52948 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.64□□□□□ -1.99
NUP98P52948 AL160237.3-201ENST00000604114 1013 ntBASIC2.64□□□□□ -1.99
NUP98P52948 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
NUP98P52948 RNF6P1-201ENST00000444889 1784 ntBASIC2.64□□□□□ -1.99
NUP98P52948 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
NUP98P52948 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.64□□□□□ -1.99
NUP98P52948 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.64□□□□□ -1.99
NUP98P52948 MTND5P29-201ENST00000458676 1807 ntBASIC2.64□□□□□ -1.99
NUP98P52948 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
NUP98P52948 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
NUP98P52948 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.63□□□□□ -1.99
NUP98P52948 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms