Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NUP58P1-201ENST00000502546 1738 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 DCAF13P1-201ENST00000495256 1330 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA1P49639 AL049780.3-201ENST00000624612 1583 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA1P49639 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.47□□□□□ -1.85
HOXA1P49639 U3.29-201ENST00000391296 212 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 RNA5SP397-201ENST00000391323 118 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC136624.1-201ENST00000400791 413 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 MTND4LP20-201ENST00000402379 270 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA1P49639 RNU6-248P-201ENST00000410720 107 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 RNU6-195P-201ENST00000411352 109 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 USP9YP13-201ENST00000417797 480 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 RPS15AP6-201ENST00000420703 385 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC012065.2-201ENST00000421295 375 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC010975.2-201ENST00000427781 588 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 RPS3AP54-201ENST00000435535 734 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC114495.1-201ENST00000441274 436 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 FAM103A2P-201ENST00000444122 354 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 CEACAMP6-201ENST00000452007 574 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AP001992.1-205ENST00000462248 379 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 RPS3AP41-201ENST00000462701 778 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AP001025.2-201ENST00000490908 477 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA1P49639 OR5H5P-201ENST00000503164 928 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 BNIP3P41-201ENST00000503774 571 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC026784.1-201ENST00000507986 352 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AL117351.2-201ENST00000513571 157 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC093853.1-201ENST00000515689 483 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 OR5BC1P-201ENST00000529327 739 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.47□□□□□ -1.85
HOXA1P49639 AL845331.3-202ENST00000562856 261 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC009977.1-201ENST00000586015 570 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 BNIP3P8-201ENST00000597863 560 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AP003117.2-201ENST00000606010 545 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC080013.4-201ENST00000607624 649 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC133644.2-201ENST00000608142 540 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC131902.3-201ENST00000611767 581 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC040168.1-201ENST00000623594 991 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.47□□□□□ -1.85
HOXA1P49639 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HOXA1P49639 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
HOXA1P49639 AC092447.7-201ENST00000422212 1621 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC138915.3-201ENST00000562908 1389 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 AC011978.2-201ENST00000569835 2054 ntBASIC3.47□□□□□ -1.85
HOXA1P49639 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HOXA1P49639 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA1P49639 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA1P49639 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA1P49639 AC091152.2-201ENST00000591628 2569 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 RNA5SP175-201ENST00000364275 119 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA1P49639 SNORD66.1-201ENST00000391230 76 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 AL109941.1-201ENST00000401925 229 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 RPS20P2-201ENST00000402520 389 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 TANK-203ENST00000402568 878 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA1P49639 CCNG1P1-201ENST00000406783 885 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 Y_RNA.598-201ENST00000410480 95 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 RNU2-15P-201ENST00000410692 191 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 HMGB3P23-201ENST00000414981 585 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA1P49639 MTCO2P5-201ENST00000422621 426 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 OR8F1P-201ENST00000425243 930 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA1P49639 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA1P49639 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA1P49639 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA1P49639 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA1P49639 RPL7P52-201ENST00000449200 742 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA1P49639 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA1P49639 HMGB1P15-201ENST00000453854 435 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 SNORD42A-201ENST00000459584 64 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 SRRM1P2-201ENST00000464531 1192 ntBASIC3.46□□□□□ -1.86
HOXA1P49639 RPS4XP10-201ENST00000465034 731 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms