Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC105137.2-201ENST00000569073 466 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 AC012182.1-201ENST00000570133 895 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 AL645944.1-201ENST00000603857 493 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL18A1P39060 DCAF13P3-201ENST00000561147 1334 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
COL18A1P39060 RNU6-819P-201ENST00000364116 107 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 RNU6-670P-201ENST00000364312 104 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.92□□□□□ -1.94
COL18A1P39060 AC009965.2-201ENST00000425328 970 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 HMGB1P48-201ENST00000446155 598 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 AL645939.1-201ENST00000453429 797 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC2.92□□□□□ -1.94
COL18A1P39060 AC010683.1-201ENST00000473673 378 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.92□□□□□ -1.94
COL18A1P39060 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.92□□□□□ -1.94
COL18A1P39060 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.92□□□□□ -1.94
COL18A1P39060 AP004247.3-201ENST00000608682 624 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 AL391834.1-201ENST00000609609 560 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 AC010378.1-201ENST00000619270 362 ntBASIC2.92□□□□□ -1.94
COL18A1P39060 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.92□□□□□ -1.94
COL18A1P39060 NSRP1P1-201ENST00000444067 1693 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL18A1P39060 Y_RNA.338-201ENST00000365320 114 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 SNORA67.3-201ENST00000384366 140 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 MIR320B1-201ENST00000390209 79 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
COL18A1P39060 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
COL18A1P39060 AC009969.1-201ENST00000438726 172 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.91□□□□□ -1.94
COL18A1P39060 ATG10-AS1-201ENST00000504846 648 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL18A1P39060 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.91□□□□□ -1.94
COL18A1P39060 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.91□□□□□ -1.94
COL18A1P39060 AC002076.2-201ENST00000617362 122 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.91□□□□□ -1.94
COL18A1P39060 CFTRP2-201ENST00000634304 199 ntBASIC2.91□□□□□ -1.94
COL18A1P39060 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.91□□□□□ -1.94
COL18A1P39060 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
COL18A1P39060 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
COL18A1P39060 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
COL18A1P39060 RNU4-23P-201ENST00000362839 140 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 AL353898.1-201ENST00000444055 238 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 AC092045.1-201ENST00000495716 1231 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 OR4V1P-201ENST00000525394 1140 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 AC068339.2-201ENST00000534395 618 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC2.9□□□□□ -1.94
COL18A1P39060 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.9□□□□□ -1.94
COL18A1P39060 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.9□□□□□ -1.94
COL18A1P39060 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.9□□□□□ -1.94
COL18A1P39060 MTND5P29-201ENST00000458676 1807 ntBASIC2.9□□□□□ -1.95
COL18A1P39060 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.9□□□□□ -1.95
COL18A1P39060 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
COL18A1P39060 AL359715.4-201ENST00000606629 1436 ntBASIC2.9□□□□□ -1.95
COL18A1P39060 AL139811.1-201ENST00000424779 2299 ntBASIC2.9□□□□□ -1.95
COL18A1P39060 AC011460.1-201ENST00000636268 1834 ntBASIC2.9□□□□□ -1.95
COL18A1P39060 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC098826.1-201ENST00000433943 471 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC021146.7-201ENST00000509604 775 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC067904.2-201ENST00000517322 1283 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 HSPE1P18-201ENST00000517602 280 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC084033.1-201ENST00000550830 633 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 AL451074.6-201ENST00000608512 729 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.89□□□□□ -1.95
COL18A1P39060 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 MTND5P28-201ENST00000438005 1594 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL18A1P39060 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
COL18A1P39060 SNORA25.6-201ENST00000364121 118 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 SNORA62.2-201ENST00000364672 152 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL18A1P39060 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL18A1P39060 MUPP-201ENST00000438111 566 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AC007677.1-201ENST00000445757 515 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 POU5F1P7-201ENST00000508759 541 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.89□□□□□ -1.95
COL18A1P39060 AC006116.7-201ENST00000590141 756 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 AP004372.1-201ENST00000604842 844 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 uc_338.9-201ENST00000617424 182 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL18A1P39060 AC093591.3-201ENST00000634516 308 ntBASIC2.89□□□□□ -1.95
COL18A1P39060 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL18A1P39060 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.88□□□□□ -1.95
COL18A1P39060 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL18A1P39060 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL18A1P39060 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
COL18A1P39060 RPL23AP36-201ENST00000413895 458 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL18A1P39060 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.88□□□□□ -1.95
COL18A1P39060 AL627224.1-201ENST00000448334 444 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 NDUFS5P3-201ENST00000450668 321 ntBASIC2.88□□□□□ -1.95
COL18A1P39060 AP000926.1-201ENST00000479573 241 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms