Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 HSPA8P14-201ENST00000552265 1805 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC016583.1-201ENST00000624221 2431 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 RNU6-1035P-201ENST00000384477 107 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 AP003170.5-201ENST00000397185 335 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 RPL23AP36-201ENST00000413895 458 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 MRPL53P1-201ENST00000414323 319 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 BX842559.1-201ENST00000419615 532 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 AC093414.1-201ENST00000434712 514 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.23□□□□□ -1.57
COL8A1P27658 RPL23AP81-201ENST00000455252 467 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC018437.1-201ENST00000492214 406 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 AC072052.1-201ENST00000496556 306 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 IGKV1D-22-201ENST00000518953 324 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 AL133153.1-201ENST00000557756 303 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC136932.1-201ENST00000574771 208 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 VN1R84P-201ENST00000593697 235 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 ELOCP5-201ENST00000604924 333 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 AL049539.1-201ENST00000611964 459 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 AC068870.2-201ENST00000620635 389 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 MTND1P7-201ENST00000632801 297 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 MIR4679-1-201ENST00000637619 75 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 EXOC5P1-201ENST00000510543 1969 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 AC139426.3-201ENST00000605648 2059 ntBASIC5.23□□□□□ -1.57
COL8A1P27658 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 COG2-209ENST00000534989 2963 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL8A1P27658 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
COL8A1P27658 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.23□□□□□ -1.57
COL8A1P27658 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL8A1P27658 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL8A1P27658 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 IRF5P1-201ENST00000504852 2164 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL8A1P27658 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.22□□□□□ -1.57
COL8A1P27658 Y_RNA.27-201ENST00000362540 103 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 Y_RNA.439-201ENST00000384119 94 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 RNU6-708P-201ENST00000384217 107 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AL023284.3-201ENST00000407767 334 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 RN7SKP213-201ENST00000410746 298 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AC016397.1-201ENST00000412463 242 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AC017079.2-201ENST00000416102 485 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 CYP4F30P-202ENST00000420048 405 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 RPS12P5-201ENST00000423449 371 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 PSMD10P3-201ENST00000437000 448 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 RPS7P3-201ENST00000443360 580 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 TPT1P13-201ENST00000449760 499 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 AC006463.2-201ENST00000473326 348 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AP000926.1-201ENST00000479573 241 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 ATP5LP5-201ENST00000483050 299 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.22□□□□□ -1.57
COL8A1P27658 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL8A1P27658 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 AC027288.2-201ENST00000553028 243 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.22□□□□□ -1.57
COL8A1P27658 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.22□□□□□ -1.57
COL8A1P27658 AC141002.1-201ENST00000607025 279 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AL161616.1-201ENST00000611867 286 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AC000123.2-201ENST00000623124 461 ntBASIC5.22□□□□□ -1.57
COL8A1P27658 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms