Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MTCYBP33-201ENST00000575007 1130 ntBASIC3.67□□□□□ -1.82
MSH3P20585 MIR4637-201ENST00000582405 84 ntBASIC3.67□□□□□ -1.82
MSH3P20585 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.67□□□□□ -1.82
MSH3P20585 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.67□□□□□ -1.82
MSH3P20585 AC004987.4-201ENST00000603383 338 ntBASIC3.67□□□□□ -1.82
MSH3P20585 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 AC084782.3-201ENST00000612282 578 ntBASIC3.67□□□□□ -1.82
MSH3P20585 Z69908.1-201ENST00000622603 247 ntBASIC3.67□□□□□ -1.82
MSH3P20585 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 MIR4496-201ENST00000635896 61 ntBASIC3.67□□□□□ -1.82
MSH3P20585 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 AC011978.2-201ENST00000569835 2054 ntBASIC3.67□□□□□ -1.82
MSH3P20585 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSH3P20585 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
MSH3P20585 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
MSH3P20585 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 RPL21P132-201ENST00000331267 462 ntBASIC3.66□□□□□ -1.82
MSH3P20585 Y_RNA.77-201ENST00000362962 107 ntBASIC3.66□□□□□ -1.82
MSH3P20585 RNU6-433P-201ENST00000363216 104 ntBASIC3.66□□□□□ -1.82
MSH3P20585 Y_RNA.318-201ENST00000365131 97 ntBASIC3.66□□□□□ -1.82
MSH3P20585 RNA5SP88-201ENST00000365560 109 ntBASIC3.66□□□□□ -1.82
MSH3P20585 ARF4P3-201ENST00000397387 509 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC069218.2-201ENST00000411665 344 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 HSFY4P-201ENST00000415994 1181 ntBASIC3.66□□□□□ -1.82
MSH3P20585 HMGB3P20-201ENST00000417997 600 ntBASIC3.66□□□□□ -1.82
MSH3P20585 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.66□□□□□ -1.82
MSH3P20585 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AC129850.1-201ENST00000436203 508 ntBASIC3.66□□□□□ -1.82
MSH3P20585 MTND4P6-201ENST00000438297 472 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.66□□□□□ -1.82
MSH3P20585 MTND1P29-201ENST00000448112 647 ntBASIC3.66□□□□□ -1.82
MSH3P20585 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 AC099563.1-201ENST00000456086 418 ntBASIC3.66□□□□□ -1.82
MSH3P20585 ARPC3P2-201ENST00000457786 533 ntBASIC3.66□□□□□ -1.82
MSH3P20585 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 MTND4LP3-201ENST00000468320 276 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.66□□□□□ -1.82
MSH3P20585 AC080014.1-201ENST00000496877 1201 ntBASIC3.66□□□□□ -1.82
MSH3P20585 UBE2CP3-201ENST00000502715 450 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.66□□□□□ -1.82
MSH3P20585 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.66□□□□□ -1.82
MSH3P20585 AC021146.1-201ENST00000511202 716 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC026412.2-201ENST00000512270 1075 ntBASIC3.66□□□□□ -1.82
MSH3P20585 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AC023632.4-201ENST00000517783 191 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AC239860.2-201ENST00000525886 270 ntBASIC3.66□□□□□ -1.82
MSH3P20585 OR8L1P-201ENST00000534005 955 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC008011.1-201ENST00000545989 227 ntBASIC3.66□□□□□ -1.82
MSH3P20585 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 CENPUP2-201ENST00000555897 1186 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 HSPE1P3-201ENST00000559254 309 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AC136618.2-201ENST00000575091 400 ntBASIC3.66□□□□□ -1.82
MSH3P20585 LARP7P2-201ENST00000575306 125 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 AL031985.2-201ENST00000600955 480 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AF131215.7-201ENST00000602443 707 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC112230.1-201ENST00000604342 547 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.66□□□□□ -1.82
MSH3P20585 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 AC008443.7-201ENST00000622195 246 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC139792.2-201ENST00000624218 587 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AC127502.3-201ENST00000636170 1206 ntBASIC3.66□□□□□ -1.82
MSH3P20585 AP000553.6-201ENST00000641242 118 ntBASIC3.66□□□□□ -1.82
MSH3P20585 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
MSH3P20585 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
MSH3P20585 AL122126.1-201ENST00000546905 1318 ntBASIC3.66□□□□□ -1.82
MSH3P20585 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
MSH3P20585 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
MSH3P20585 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
MSH3P20585 DDX43P2-201ENST00000604753 1354 ntBASIC3.65□□□□□ -1.82
MSH3P20585 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.65□□□□□ -1.82
MSH3P20585 OR4G11P-202ENST00000642116 1414 ntBASIC3.65□□□□□ -1.83
MSH3P20585 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
MSH3P20585 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
MSH3P20585 RNU6-356P-201ENST00000384140 107 ntBASIC3.65□□□□□ -1.83
MSH3P20585 U8.11-201ENST00000384699 133 ntBASIC3.65□□□□□ -1.83
MSH3P20585 U8.12-201ENST00000384701 133 ntBASIC3.65□□□□□ -1.83
MSH3P20585 RNU6-328P-201ENST00000390887 106 ntBASIC3.65□□□□□ -1.83
MSH3P20585 SOD2P1-201ENST00000396543 562 ntBASIC3.65□□□□□ -1.83
MSH3P20585 RPS3AP26-201ENST00000398259 784 ntBASIC3.65□□□□□ -1.83
MSH3P20585 SSXP10-201ENST00000402595 565 ntBASIC3.65□□□□□ -1.83
MSH3P20585 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms