Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC104651.2-201ENST00000447549 528 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL37P3-201ENST00000456825 293 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC010618.1-201ENST00000469924 477 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC083904.1-201ENST00000487828 231 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC023632.4-201ENST00000517783 191 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MAL2-201ENST00000522112 573 ntTSL 4 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OR5B10P-201ENST00000532869 642 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR4660-201ENST00000583549 74 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 BX664608.1-201ENST00000610519 487 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC130324.3-201ENST00000614165 542 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC137590.2-201ENST00000619709 240 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC112200.1-201ENST00000625015 234 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 EFTUD1P2-201ENST00000514817 1603 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU5E-8P-201ENST00000363502 116 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.301-201ENST00000364990 103 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL121972.1-201ENST00000402023 252 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNA5SP498-201ENST00000411342 120 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC008267.5-201ENST00000424928 265 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 GAPDHP14-201ENST00000450472 937 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC010733.1-201ENST00000451515 401 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.653-201ENST00000459091 95 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC015911.1-201ENST00000495111 156 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MTCYBP40-201ENST00000509390 1135 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC021146.1-201ENST00000511202 716 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 IGHV3-63-201ENST00000518422 341 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC105031.1-201ENST00000518550 476 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC090312.2-201ENST00000582687 378 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC073539.2-201ENST00000597113 165 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-89P-201ENST00000606519 100 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ZNF807-201ENST00000328088 1707 ntBASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AP004289.2-201ENST00000444413 1457 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC009643.2-201ENST00000603543 1448 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC105074.1-201ENST00000623380 3095 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNA5SP191-201ENST00000362585 102 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.46-201ENST00000362695 102 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNY1P12-201ENST00000364251 105 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.307-201ENST00000365022 117 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-996P-201ENST00000365438 107 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OR52E6-202ENST00000379946 954 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.552-201ENST00000384665 112 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SNORD37.1-201ENST00000390968 65 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR1303-201ENST00000408625 86 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-1304P-201ENST00000411374 106 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL7P4-203ENST00000430239 730 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL160004.2-201ENST00000432935 350 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS15AP9-201ENST00000439856 381 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS27AP15-201ENST00000447672 466 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MTND3P16-201ENST00000452205 344 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL356010.1-201ENST00000456364 102 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ELOCP24-201ENST00000456370 334 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL7P15-201ENST00000461190 712 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS17P2-201ENST00000461663 408 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS24P16-201ENST00000497294 392 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AK3P4-201ENST00000504283 583 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC091885.1-201ENST00000506658 268 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 COX6B1P5-201ENST00000509843 249 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 FAM206BP-201ENST00000510179 541 ntBASIC6.6□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SNORA25.10-201ENST00000515926 124 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms