Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MIR4260-201ENST00000583107 67 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 COX6CP7-201ENST00000597056 208 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AC007566.2-201ENST00000603642 413 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MIR6806-201ENST00000622141 64 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AL606534.2-204ENST00000635008 178 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 AL031119.1-201ENST00000404707 1879 ntBASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HIF3AQ9Y2N7 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC103710.2-202ENST00000641454 2853 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.39-201ENST00000362620 98 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 SNORA20.1-201ENST00000364790 130 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 Y_RNA.380-201ENST00000365663 111 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 MTCO2P33-201ENST00000402100 465 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 USP9YP30-201ENST00000430729 455 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 GAPDHP48-201ENST00000436626 961 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 FTH1P25-201ENST00000447665 469 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC118758.1-202ENST00000454719 225 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC112492.4-201ENST00000456549 352 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC053481.1-201ENST00000467217 306 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 HMGN2P36-201ENST00000529541 409 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 CYCSP38-201ENST00000559840 322 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC096996.1-201ENST00000563813 325 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC098479.1-201ENST00000609225 154 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 U2.17-201ENST00000611454 95 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC103858.2-201ENST00000621471 543 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AP001005.3-201ENST00000622049 129 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 EXOC5P1-201ENST00000510543 1969 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AC087516.1-201ENST00000561236 2428 ntBASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HIF3AQ9Y2N7 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HIF3AQ9Y2N7 RN7SKP185-201ENST00000362813 326 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RPL21P1-201ENST00000399532 476 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AL583834.1-201ENST00000406943 343 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 MIR1302-6-201ENST00000408466 90 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RPS15AP40-201ENST00000419621 391 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 CALM2P2-201ENST00000428512 440 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC007679.3-201ENST00000434035 414 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 PPIAP3-201ENST00000450588 505 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 Z83838.1-202ENST00000456225 839 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RPS27AP1-201ENST00000475545 471 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RPS17P15-201ENST00000475609 349 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RN7SL570P-201ENST00000484405 292 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 DUTP1-201ENST00000493631 470 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RPS17P5-201ENST00000498293 408 ntBASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.15□□□□□ -1.59
HIF3AQ9Y2N7 RNU6-475P-201ENST00000516073 104 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms