Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC093414.1-201ENST00000434712 514 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 RPL35AP21-201ENST00000437667 333 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 SNRPGP6-201ENST00000451124 220 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC005008.1-201ENST00000456151 612 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC007537.2-201ENST00000472093 511 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC007686.1-201ENST00000488511 463 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 RPL7P23-201ENST00000493874 747 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC108475.1-201ENST00000507880 950 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC026801.2-201ENST00000515352 425 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 RPL23AP53-201ENST00000521854 457 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC022882.1-201ENST00000532142 501 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC055876.1-202ENST00000567053 138 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC091135.1-201ENST00000585943 307 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 LARP7P1-201ENST00000605576 316 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC090948.1-201ENST00000607464 549 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AP002360.3-201ENST00000607673 710 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC007497.1-201ENST00000610421 561 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 AC099654.5-201ENST00000636479 350 ntBASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM39Q9HCM9 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
TRIM39Q9HCM9 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
TRIM39Q9HCM9 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.84□□□□□ -1.64
TRIM39Q9HCM9 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 Y_RNA.38-201ENST00000362617 102 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 SNORA69-201ENST00000383895 132 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 MIR1-2-201ENST00000384961 85 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL357515.1-201ENST00000402967 542 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC016769.2-201ENST00000414815 475 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 ATP5JP1-201ENST00000431631 322 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 GTF2IP20-201ENST00000431663 360 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL772161.1-201ENST00000439130 476 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC000111.2-201ENST00000448200 210 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL356010.1-201ENST00000456364 102 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC092324.1-201ENST00000468671 324 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 RPS3AP50-201ENST00000487064 803 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC135721.1-201ENST00000497954 479 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC046134.1-201ENST00000514454 666 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 SNORA40.12-201ENST00000516329 111 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 RNA5SP392-201ENST00000516905 112 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AL031320.1-201ENST00000604177 357 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC103710.2-201ENST00000609912 942 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC130324.3-201ENST00000614165 542 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AP005264.7-201ENST00000625003 745 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 MAPK10-263ENST00000641052 4307 ntBASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM39Q9HCM9 SAMMSON-226ENST00000642089 1582 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 DDX10P1-201ENST00000448545 1933 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 MTND4P12-201ENST00000498999 1377 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 Y_RNA.160-201ENST00000363677 92 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RN7SKP103-201ENST00000363848 320 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms