Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RN7SL542P-201ENST00000467147 294 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 ST13P14-201ENST00000474095 734 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC112204.1-201ENST00000502591 103 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 SAP18P1-201ENST00000512058 390 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 RNU6-714P-201ENST00000516963 103 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AF186190.1-201ENST00000517470 480 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 IGHV3-32-201ENST00000519182 355 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 MED28P5-201ENST00000528254 438 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC022882.1-201ENST00000532142 501 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC069240.1-201ENST00000548774 375 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 AGGF1P4-201ENST00000568249 801 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 MIR4286-201ENST00000580651 93 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC004853.1-201ENST00000604902 698 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AC015813.4-201ENST00000610469 179 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP88Q99567 AC008250.2-201ENST00000615261 205 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 AL596245.1-201ENST00000618994 362 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP88Q99567 Z82217.1-201ENST00000625157 8149 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP88Q99567 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP88Q99567 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP88Q99567 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.79□□□□□ -1.64
NUP88Q99567 MTND4P26-201ENST00000415971 1359 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
NUP88Q99567 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NUP88Q99567 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP88Q99567 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 AC074029.4-201ENST00000624796 1859 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
NUP88Q99567 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
NUP88Q99567 MIR448-201ENST00000362131 111 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 RNY4P24-201ENST00000362735 96 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP88Q99567 SNORD51-201ENST00000384320 80 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
NUP88Q99567 SNORA40.3-201ENST00000390964 122 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 SNORA48.7-201ENST00000391302 135 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AL160275.2-201ENST00000412010 394 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 HMGN1P14-201ENST00000412459 517 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC007899.1-201ENST00000412776 775 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 CDK8P2-201ENST00000415020 547 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC245052.5-201ENST00000416320 649 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 USP9YP13-201ENST00000417797 480 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.78□□□□□ -1.64
NUP88Q99567 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP88Q99567 RPL5P30-201ENST00000465511 891 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 BNIP3P41-201ENST00000503774 571 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 ARL2BPP4-201ENST00000506854 471 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC010460.1-201ENST00000507087 466 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 PAICSP4-201ENST00000517543 1253 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC023632.4-201ENST00000517783 191 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 MYL12AP1-201ENST00000518490 515 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.78□□□□□ -1.64
NUP88Q99567 EEF1B2P4-201ENST00000551398 348 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.78□□□□□ -1.64
NUP88Q99567 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC4.78□□□□□ -1.64
NUP88Q99567 AC005771.1-201ENST00000585581 349 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.78□□□□□ -1.64
NUP88Q99567 AC100793.4-201ENST00000613683 429 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC138932.5-201ENST00000617759 563 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 AC018755.4-201ENST00000619715 454 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
NUP88Q99567 AL590240.3-201ENST00000621416 943 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 MIR6500-201ENST00000622700 86 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
NUP88Q99567 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
NUP88Q99567 AC092125.1-201ENST00000562568 1995 ntBASIC4.78□□□□□ -1.64
NUP88Q99567 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
NUP88Q99567 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.65
NUP88Q99567 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
NUP88Q99567 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NUP88Q99567 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NUP88Q99567 MTND5P3-201ENST00000438536 1800 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 TEX21P-201ENST00000447107 1476 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NUP88Q99567 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
NUP88Q99567 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.77□□□□□ -1.65
NUP88Q99567 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 DEFB108C-201ENST00000400154 252 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 OR5BE1P-201ENST00000425977 939 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.77□□□□□ -1.65
NUP88Q99567 AC069285.2-201ENST00000440210 275 ntBASIC4.77□□□□□ -1.65
NUP88Q99567 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
NUP88Q99567 AL592447.1-201ENST00000447592 540 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms