Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CD24P4-201ENST00000382840 243 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 SNORA44-201ENST00000384584 132 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 snoU13.4-201ENST00000458916 104 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AL672167.3-201ENST00000465951 960 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AC133963.2-201ENST00000513686 578 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 IGKV2D-36-201ENST00000518643 226 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 SERPINE4P-201ENST00000554978 281 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AC019159.1-201ENST00000605094 187 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 AL391597.1-201ENST00000618707 694 ntBASIC2.74□□□□□ -1.97
CCDC42Q96M95 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 NACA3P-201ENST00000359690 648 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 U8.8-201ENST00000365399 135 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 RNU1-138P-201ENST00000384093 164 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 SNORA48.7-201ENST00000391302 135 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 RNU6-564P-201ENST00000410983 104 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC080125.1-201ENST00000414888 684 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 UBE2D3P2-201ENST00000424409 445 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AL513175.1-201ENST00000431492 780 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC129850.1-201ENST00000436203 508 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 NANOGNBP1-201ENST00000448444 480 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 S100A11P2-201ENST00000467589 312 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 HMGB1P3-201ENST00000502802 616 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC004062.1-201ENST00000509926 645 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC093770.1-201ENST00000511559 571 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC42Q96M95 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC009220.3-201ENST00000604318 586 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 HSPE1P14-201ENST00000605812 302 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AC018755.4-201ENST00000619715 454 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC42Q96M95 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC42Q96M95 MTND4P8-201ENST00000514997 1362 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 AP000526.1-201ENST00000603308 1388 ntBASIC2.73□□□□□ -1.97
CCDC42Q96M95 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
CCDC42Q96M95 CUL1P1-201ENST00000509510 2425 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC42Q96M95 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AL512646.1-201ENST00000269395 1077 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC42Q96M95 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC42Q96M95 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 SNORD62.1-201ENST00000362541 86 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AL162578.1-201ENST00000406202 378 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC073264.1-201ENST00000411508 416 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 OFD1P18Y-201ENST00000420889 959 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC073310.1-201ENST00000423226 1033 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AP000852.1-201ENST00000472460 573 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 RNA5SP367-201ENST00000516557 118 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC243972.3-201ENST00000539655 198 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC128657.1-201ENST00000549459 145 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 DNAJC8P1-201ENST00000554535 372 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC42Q96M95 DUXAP3-201ENST00000603616 594 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 AC073111.2-201ENST00000605657 1075 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 VN1R7P-201ENST00000619242 903 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.72□□□□□ -1.97
CCDC42Q96M95 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC42Q96M95 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC42Q96M95 RNA5SP393-201ENST00000363423 117 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 RNA5SP171-201ENST00000391071 115 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 RNA5SP56-201ENST00000410277 118 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC42Q96M95 MTCO2P17-201ENST00000424336 677 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC092017.2-201ENST00000427600 362 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AL034418.1-201ENST00000448675 860 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC42Q96M95 OSBPL9P3-201ENST00000534523 595 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC139103.1-201ENST00000534696 1030 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC074029.2-201ENST00000551045 634 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 CR383656.14-201ENST00000551951 406 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 MIR4504-201ENST00000577413 92 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC053481.3-201ENST00000577881 843 ntBASIC2.71□□□□□ -1.98
CCDC42Q96M95 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms