Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RNU4-35P-201ENST00000362588 141 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP197-201ENST00000363357 119 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 U8.9-201ENST00000365667 134 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 U3.29-201ENST00000391296 212 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RN7SKP202-201ENST00000410439 330 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RNA5SP229-201ENST00000410809 99 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 CYCSP19-201ENST00000411715 316 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 HSPD1P21-201ENST00000436541 245 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RPL21P2-201ENST00000440049 481 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RNF2P1-201ENST00000442955 1010 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 RPL36AP33-201ENST00000450395 310 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AL445669.2-201ENST00000454425 421 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AL590639.1-201ENST00000456484 337 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 FCF1P6-201ENST00000456841 595 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 MTCO3P2-201ENST00000457365 171 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 snoU13.24-201ENST00000458998 104 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 HMGB1P25-201ENST00000468402 607 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC068587.1-201ENST00000483613 781 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 CAB39P1-201ENST00000502277 460 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 PRELID3BP6-201ENST00000503839 571 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC005476.1-201ENST00000554427 397 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC012182.1-201ENST00000570133 895 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AL121895.2-201ENST00000619558 447 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC123767.1-202ENST00000620407 817 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC091903.1-201ENST00000624322 454 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC026634.1-201ENST00000634369 198 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 ANKRD36P1-201ENST00000344424 659 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 snoZ40.1-201ENST00000364540 72 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU6-761P-201ENST00000384148 107 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 SNORA40.2-201ENST00000390847 128 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL161449.1-201ENST00000414531 1199 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 SYF2P2-201ENST00000417620 583 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 MTND4P3-201ENST00000417829 541 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC006548.1-201ENST00000427470 102 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 YWHAZP7-201ENST00000436906 631 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC241584.1-201ENST00000438469 1241 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 GAPDHP27-201ENST00000447427 1020 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL133547.1-201ENST00000448546 220 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RPL21P13-201ENST00000488305 481 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 KLHL2P1-201ENST00000508691 521 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU6-276P-201ENST00000516114 96 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU1-143P-201ENST00000516296 146 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU4ATAC10P-201ENST00000516967 122 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNU6-56P-201ENST00000516986 93 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC087481.2-201ENST00000565492 330 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 MIR4697-201ENST00000582977 78 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 SNORD84-203ENST00000584275 78 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC015688.2-201ENST00000584523 262 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 MIR4276-201ENST00000584832 70 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 BNIP3P39-201ENST00000601077 554 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 BDH2P1-201ENST00000602288 736 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 XIAPP1-201ENST00000603162 600 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL158050.2-201ENST00000605336 568 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 AL121652.1-201ENST00000608851 448 ntBASIC2.82□□□□□ -1.96
CCDC54Q8NEL0 U1.23-201ENST00000610293 146 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms