Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC025674.1-201ENST00000507074 324 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.72□□□□□ -1.65
USP39Q53GS9 RNU6-709P-201ENST00000517257 104 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC020661.2-201ENST00000560114 134 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC037471.2-201ENST00000564941 598 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AP001180.3-201ENST00000582221 145 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC090525.3-201ENST00000605601 189 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AL133255.1-201ENST00000606374 441 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 uc_338.9-201ENST00000617424 182 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC018926.3-201ENST00000618841 406 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC005858.4-201ENST00000623191 700 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AL732618.1-201ENST00000623251 301 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC026634.1-201ENST00000634369 198 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
USP39Q53GS9 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 Z73965.1-201ENST00000623412 2297 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC107068.1-201ENST00000563286 4218 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
USP39Q53GS9 MFSD8-242ENST00000641690 4199 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.72□□□□□ -1.65
USP39Q53GS9 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USP39Q53GS9 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
USP39Q53GS9 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.71□□□□□ -1.66
USP39Q53GS9 SNRPEP3-201ENST00000338402 276 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 Y_RNA.67-201ENST00000362870 100 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RNU6-777P-201ENST00000364265 104 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 SNORA62.2-201ENST00000364672 152 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RNU6-359P-201ENST00000365466 108 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 Y_RNA.481-201ENST00000384373 102 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 SPA17P1-201ENST00000416656 452 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.71□□□□□ -1.66
USP39Q53GS9 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AL645608.4-201ENST00000423619 154 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.71□□□□□ -1.66
USP39Q53GS9 RPL31P35-201ENST00000431058 377 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC023347.2-201ENST00000433994 462 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 CBX1P1-201ENST00000440184 427 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RPL23AP16-201ENST00000441715 421 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC239809.1-201ENST00000450470 217 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.71□□□□□ -1.66
USP39Q53GS9 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 MTCO1P42-201ENST00000457379 726 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RPL5P30-201ENST00000465511 891 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RPL36AP51-201ENST00000487216 318 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC112204.1-201ENST00000502591 103 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC006390.1-201ENST00000508068 283 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC026402.1-201ENST00000513642 170 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.71□□□□□ -1.66
USP39Q53GS9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC068831.4-201ENST00000556118 109 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.71□□□□□ -1.66
USP39Q53GS9 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.71□□□□□ -1.66
USP39Q53GS9 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 BNIP3P22-201ENST00000593399 556 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC091979.2-201ENST00000607514 214 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.71□□□□□ -1.66
USP39Q53GS9 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 AC068722.2-201ENST00000618734 544 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 U3.53-201ENST00000628922 216 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.71□□□□□ -1.66
USP39Q53GS9 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 AC139713.2-215ENST00000641428 5037 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.71□□□□□ -1.66
USP39Q53GS9 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
USP39Q53GS9 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.7□□□□□ -1.66
USP39Q53GS9 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms