Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HOXA4Q00056 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 OR1S2-201ENST00000302592 978 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 RNU6-1097P-201ENST00000363586 107 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 Y_RNA.263-201ENST00000364659 114 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RNY3P13-201ENST00000365542 102 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 RNU6-74P-201ENST00000384235 107 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
HOXA4Q00056 RPL26P29-201ENST00000415623 438 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AC140479.3-201ENST00000418944 1126 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AL590609.2-201ENST00000421430 368 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA4Q00056 AL513185.2-201ENST00000425543 193 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RPL12P46-201ENST00000436610 195 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 CALM1P1-201ENST00000442082 433 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RAC1P7-201ENST00000445367 377 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AC104651.2-201ENST00000447549 528 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 EIF4A1P11-201ENST00000451239 222 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 NANOGP10-201ENST00000453325 895 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RPL37P6-202ENST00000464216 403 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RPL36AP41-201ENST00000493820 306 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA4Q00056 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 RNU6-513P-201ENST00000516104 104 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 RNU6-27P-201ENST00000516146 107 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 SNORA40.12-201ENST00000516329 111 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA4Q00056 OR4T1P-201ENST00000554933 911 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA4Q00056 MIR4512-201ENST00000583257 77 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXA4Q00056 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 RNU4-89P-201ENST00000607443 133 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AC245517.5-201ENST00000611529 162 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 AL161616.1-201ENST00000611867 286 ntBASIC3.93□□□□□ -1.78
HOXA4Q00056 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXA4Q00056 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
HOXA4Q00056 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXA4Q00056 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC126323.6-202ENST00000568092 3511 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 MAPK10-263ENST00000641052 4307 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
HOXA4Q00056 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AL391684.1-202ENST00000641293 1636 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC011155.1-201ENST00000316512 456 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXA4Q00056 RNU6-223P-201ENST00000362830 107 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RNU1-83P-201ENST00000363426 164 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RNU6-178P-201ENST00000384631 104 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 MIR19A-201ENST00000384878 82 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXA4Q00056 BX510359.2-201ENST00000417920 305 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RPL36AP10-201ENST00000421785 322 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 EIF1P3-201ENST00000423841 334 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.92□□□□□ -1.78
HOXA4Q00056 MTND1P14-201ENST00000427400 950 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 RPL12P18-201ENST00000437175 325 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AL772161.1-201ENST00000439130 476 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC073264.2-201ENST00000448886 166 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXA4Q00056 RPS20P24-201ENST00000457473 361 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 SNORD121B-201ENST00000458838 81 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RPS27AP17-201ENST00000463344 455 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RN7SL459P-201ENST00000481078 302 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 RNU1-6P-201ENST00000516290 144 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.92□□□□□ -1.78
HOXA4Q00056 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXA4Q00056 PHBP17-201ENST00000528576 541 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 OR4R1P-201ENST00000529879 463 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AC107918.3-201ENST00000533272 382 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 AP006289.1-201ENST00000538089 277 ntBASIC3.92□□□□□ -1.78
HOXA4Q00056 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXA4Q00056 PDCD5P1-201ENST00000543528 309 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms