Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 CYCSP45-201ENST00000402289 315 ntBASIC3.4□□□□□ -1.87
SOX3P41225 MTND4LP20-201ENST00000402379 270 ntBASIC3.4□□□□□ -1.87
SOX3P41225 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX3P41225 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL049610.1-201ENST00000423374 372 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC005517.2-201ENST00000424673 553 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL591503.2-201ENST00000442314 1005 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL590399.6-201ENST00000446396 307 ntBASIC3.4□□□□□ -1.87
SOX3P41225 RPS3AP46-201ENST00000448352 682 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.4□□□□□ -1.87
SOX3P41225 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX3P41225 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.4□□□□□ -1.87
SOX3P41225 AC090453.1-201ENST00000495560 436 ntBASIC3.4□□□□□ -1.87
SOX3P41225 TMEM251P1-201ENST00000503717 318 ntBASIC3.4□□□□□ -1.87
SOX3P41225 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.4□□□□□ -1.87
SOX3P41225 SLC25A15P5-201ENST00000508033 253 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX3P41225 AC104619.4-201ENST00000510773 249 ntBASIC3.4□□□□□ -1.87
SOX3P41225 MTCO3P44-201ENST00000510977 541 ntBASIC3.4□□□□□ -1.87
SOX3P41225 RN7SKP18-201ENST00000516005 275 ntBASIC3.4□□□□□ -1.87
SOX3P41225 RNU6-1231P-201ENST00000517185 103 ntBASIC3.4□□□□□ -1.87
SOX3P41225 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX3P41225 AC090616.2-202ENST00000584248 222 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC020914.6-201ENST00000594327 272 ntBASIC3.4□□□□□ -1.87
SOX3P41225 LLPHP1-201ENST00000603571 367 ntBASIC3.4□□□□□ -1.87
SOX3P41225 RPL23AP92-201ENST00000603609 255 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL596327.1-201ENST00000603629 213 ntBASIC3.4□□□□□ -1.87
SOX3P41225 BNIP3P11-201ENST00000603878 563 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AL163642.2-201ENST00000604722 1019 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC018714.1-201ENST00000605028 208 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC124312.4-201ENST00000605533 310 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AP002907.1-201ENST00000606361 1430 ntBASIC3.4□□□□□ -1.87
SOX3P41225 AC004908.3-201ENST00000610248 625 ntBASIC3.4□□□□□ -1.87
SOX3P41225 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.4□□□□□ -1.87
SOX3P41225 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.4□□□□□ -1.87
SOX3P41225 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.4□□□□□ -1.87
SOX3P41225 AP000553.6-201ENST00000641242 118 ntBASIC3.4□□□□□ -1.87
SOX3P41225 OR4G11P-202ENST00000642116 1414 ntBASIC3.4□□□□□ -1.87
SOX3P41225 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 PRO1804-201ENST00000623780 2050 ntBASIC3.4□□□□□ -1.87
SOX3P41225 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SOX3P41225 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.39□□□□□ -1.87
SOX3P41225 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
SOX3P41225 XIAPP3-201ENST00000312918 795 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC007685.1-201ENST00000329806 452 ntBASIC3.39□□□□□ -1.87
SOX3P41225 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 RNA5SP171-201ENST00000391071 115 ntBASIC3.39□□□□□ -1.87
SOX3P41225 MIR1250-201ENST00000408098 113 ntBASIC3.39□□□□□ -1.87
SOX3P41225 SYF2P2-201ENST00000417620 583 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.39□□□□□ -1.87
SOX3P41225 AC091286.1-201ENST00000431233 461 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 AC127537.2-201ENST00000439258 465 ntBASIC3.39□□□□□ -1.87
SOX3P41225 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 MRPS31P2-201ENST00000451581 518 ntBASIC3.39□□□□□ -1.87
SOX3P41225 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.39□□□□□ -1.87
SOX3P41225 NIPA2P2-201ENST00000496376 1083 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC068305.1-201ENST00000497406 726 ntBASIC3.39□□□□□ -1.87
SOX3P41225 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 AC104685.1-201ENST00000502445 371 ntBASIC3.39□□□□□ -1.87
SOX3P41225 OR5H5P-201ENST00000503164 928 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.39□□□□□ -1.87
SOX3P41225 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
SOX3P41225 FTH1P9-201ENST00000513251 355 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.39□□□□□ -1.87
SOX3P41225 RNU4-60P-201ENST00000517239 135 ntBASIC3.39□□□□□ -1.87
SOX3P41225 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.39□□□□□ -1.87
SOX3P41225 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 AC135628.1-201ENST00000568867 534 ntBASIC3.39□□□□□ -1.87
SOX3P41225 MIR4444-1-201ENST00000581696 74 ntBASIC3.39□□□□□ -1.87
SOX3P41225 MIR4444-2-201ENST00000584390 74 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.39□□□□□ -1.87
SOX3P41225 SNORA51-201ENST00000606420 132 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC080013.4-201ENST00000607624 649 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC024560.3-201ENST00000608482 349 ntBASIC3.39□□□□□ -1.87
SOX3P41225 RMST_8.1-201ENST00000610287 165 ntBASIC3.39□□□□□ -1.87
SOX3P41225 VIS1.1-201ENST00000610517 203 ntBASIC3.39□□□□□ -1.87
SOX3P41225 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC025588.4-201ENST00000615802 908 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC018816.2-201ENST00000621460 353 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AC079228.1-201ENST00000624774 1049 ntBASIC3.39□□□□□ -1.87
SOX3P41225 CU459211.1-201ENST00000635667 749 ntBASIC3.39□□□□□ -1.87
SOX3P41225 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.39□□□□□ -1.87
SOX3P41225 AC007671.2-201ENST00000637344 619 ntBASIC3.39□□□□□ -1.87
SOX3P41225 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX3P41225 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms