Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A1P12109 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A1P12109 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A1P12109 MTND5P28-201ENST00000438005 1594 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
COL6A1P12109 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A1P12109 OR11H5P-202ENST00000641612 1325 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 SNORD56.2-201ENST00000363242 71 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RNU1-130P-201ENST00000363930 160 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 Y_RNA.356-201ENST00000365475 113 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.09□□□□□ -1.59
COL6A1P12109 RNU6-444P-201ENST00000383988 108 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RNU6-483P-201ENST00000384088 108 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 Y_RNA.481-201ENST00000384373 102 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A1P12109 RNA5SP239-201ENST00000410218 129 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 AC009237.10-201ENST00000414112 510 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL6A1P12109 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.09□□□□□ -1.59
COL6A1P12109 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A1P12109 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 ISCA1P6-201ENST00000427740 390 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 YWHAZP8-201ENST00000436935 731 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RPL22P17-201ENST00000438729 315 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RPL23AP16-201ENST00000441715 421 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RPL29P29-201ENST00000448725 423 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC079448.1-201ENST00000449377 373 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A1P12109 RPL38P1-201ENST00000460914 211 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC087385.1-201ENST00000475062 312 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RN7SL132P-201ENST00000478131 296 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 RPS29P25-201ENST00000481709 171 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.09□□□□□ -1.59
COL6A1P12109 RNA5SP230-201ENST00000517039 122 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 TRAV8-5-201ENST00000537369 341 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 AC090502.2-201ENST00000549267 280 ntBASIC5.09□□□□□ -1.59
COL6A1P12109 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.09□□□□□ -1.59
COL6A1P12109 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.09□□□□□ -1.59
COL6A1P12109 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.09□□□□□ -1.59
COL6A1P12109 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
COL6A1P12109 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
COL6A1P12109 AC006971.1-201ENST00000407916 4486 ntBASIC5.09□□□□□ -1.6
COL6A1P12109 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL6A1P12109 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL6A1P12109 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
COL6A1P12109 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 AC092376.2-201ENST00000622621 4116 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A1P12109 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A1P12109 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 OR5P1P-201ENST00000299512 925 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 U8.3-201ENST00000363321 132 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 SNORA62.3-201ENST00000365110 153 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 RNA5SP283-201ENST00000365604 119 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 Y_RNA.548-201ENST00000384656 105 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 MIR554-201ENST00000384874 96 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 MIR708-201ENST00000390708 88 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 SNORD115.1-201ENST00000391109 76 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 RNU6-628P-201ENST00000410675 107 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AMD1P2-201ENST00000412936 992 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A1P12109 CYCSP10-201ENST00000417973 294 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 SDCBPP3-201ENST00000419629 891 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 MTND5P14-201ENST00000441481 1267 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A1P12109 SNRPGP6-201ENST00000451124 220 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC053481.1-201ENST00000467217 306 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AL132838.2-201ENST00000492041 314 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A1P12109 RNU6-1281P-201ENST00000516223 105 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 IGKV2-23-201ENST00000518729 323 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.08□□□□□ -1.6
COL6A1P12109 AL442663.2-201ENST00000554385 511 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A1P12109 AC007566.2-201ENST00000603642 413 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 AC139792.3-201ENST00000623525 224 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 FRG1KP-201ENST00000623592 341 ntBASIC5.08□□□□□ -1.6
COL6A1P12109 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.08□□□□□ -1.6
COL6A1P12109 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL6A1P12109 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
COL6A1P12109 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms