Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORD35B-201ENST00000363660 87 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 PGBD4P8-201ENST00000412993 562 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 CRYBB2P1-203ENST00000415709 538 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 CCDC58P2-201ENST00000417131 366 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXC11O43248 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC11O43248 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC11O43248 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 OR9M1P-201ENST00000459641 921 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC11O43248 HMGB1P36-201ENST00000487709 576 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AP000563.1-201ENST00000490865 758 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC022447.3-201ENST00000506865 495 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 KLHL2P1-201ENST00000508691 521 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC006499.6-201ENST00000511169 607 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC021146.1-201ENST00000511202 716 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXC11O43248 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC11O43248 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 YPEL5P3-201ENST00000547227 352 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC11O43248 ZNF192P1-203ENST00000565888 810 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXC11O43248 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXC11O43248 AC020914.4-201ENST00000597690 277 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC097468.3-201ENST00000607956 456 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 Z99129.2-201ENST00000619967 314 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC039056.2-201ENST00000622261 511 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AP000676.3-201ENST00000623299 569 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 FAM35DP-201ENST00000323387 2712 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXC11O43248 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXC11O43248 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXC11O43248 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC11O43248 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC11O43248 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXC11O43248 RNU6-1155P-201ENST00000363554 107 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 RNU6-359P-201ENST00000365466 108 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXC11O43248 PTMAP2-201ENST00000397627 327 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 HSPE1P26-201ENST00000405341 275 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 MIR1305-201ENST00000408300 86 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC11O43248 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 MTND2P18-201ENST00000419962 1030 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AC018644.1-201ENST00000429934 551 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AL365396.1-201ENST00000430854 671 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AL445584.1-201ENST00000431451 330 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 CYCSP43-201ENST00000438233 310 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 AL133547.1-201ENST00000448546 220 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 RN7SL271P-201ENST00000487601 295 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AL139099.1-201ENST00000497398 403 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC11O43248 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXC11O43248 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC11O43248 RN7SKP244-201ENST00000516513 307 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AP004247.1-201ENST00000531556 1289 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXC11O43248 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXC11O43248 AL163642.2-201ENST00000604722 1019 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 HMGB1P50-201ENST00000605814 607 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AC103710.3-201ENST00000608157 948 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AC103710.4-201ENST00000609301 899 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 AC015967.1-201ENST00000619893 476 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 PCMTD1P7-201ENST00000634506 357 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HOXC11O43248 AF127577.6-201ENST00000623352 2191 ntBASIC4.1□□□□□ -1.75
HOXC11O43248 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXC11O43248 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
HOXC11O43248 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC11O43248 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXC11O43248 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC11O43248 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.75
HOXC11O43248 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC11O43248 RNU6-173P-201ENST00000364215 104 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 RNU6-853P-201ENST00000364306 107 ntBASIC4.09□□□□□ -1.75
HOXC11O43248 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXC11O43248 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms