Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU6-1332P-201ENST00000516666 104 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 DEFB108D-201ENST00000527787 222 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC026371.1-201ENST00000551867 419 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC174048.1-201ENST00000603389 144 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC141273.2-201ENST00000618989 130 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 IQCB2P-201ENST00000401788 1633 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 RN7SKP162-201ENST00000363605 345 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 RNU6-26P-201ENST00000383985 107 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 RNU6-214P-201ENST00000384130 107 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 RN7SKP229-201ENST00000410465 302 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 PGBD4P6-201ENST00000421501 610 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AL360081.1-201ENST00000428299 555 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 LINC02210-201ENST00000444561 288 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 PCNPP5-201ENST00000452246 481 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC096745.1-201ENST00000509945 370 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 IGLVIV-53-201ENST00000520107 367 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC091516.1-201ENST00000549191 703 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC007566.2-201ENST00000603642 413 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC025588.3-201ENST00000604182 274 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AL451044.1-201ENST00000604867 238 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC000068.2-201ENST00000608816 460 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC078938.1-201ENST00000620993 318 ntBASIC5.79□□□□□ -1.48
USP3Q9Y6I4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
USP3Q9Y6I4 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 TTC41P-205ENST00000551270 3963 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC009229.4-201ENST00000623854 1947 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RNU6-946P-201ENST00000383878 107 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RNU6-95P-201ENST00000384697 107 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AL445189.1-201ENST00000405722 338 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RNU6-55P-201ENST00000411092 107 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RPL21P24-201ENST00000413752 448 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC007529.1-201ENST00000418574 2178 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RPL7P37-201ENST00000425095 738 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AL359672.1-201ENST00000442302 409 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC104472.2-201ENST00000469035 601 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RBBP4P6-201ENST00000508098 202 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 GLUD1P3-202ENST00000508551 200 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RNU2-69P-201ENST00000516061 100 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 SCARNA16.2-201ENST00000516520 172 ntBASIC5.78□□□□□ -1.48
USP3Q9Y6I4 RNU6-323P-201ENST00000521915 107 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms