Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 MED28P6-201ENST00000558776 231 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC044860.2-201ENST00000561005 179 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC099489.2-201ENST00000574976 260 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 MIR3921-201ENST00000577308 85 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 MIR3934-201ENST00000579806 107 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 AP001029.3-201ENST00000588063 596 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC245517.5-201ENST00000611529 162 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC100793.4-201ENST00000613683 429 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 TUG1_2.1-201ENST00000614234 87 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX56Q9NY93 FARSBP1-201ENST00000435808 1778 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DDX56Q9NY93 AL672296.1-201ENST00000427780 2158 ntBASIC4.72□□□□□ -1.65
DDX56Q9NY93 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DDX56Q9NY93 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.72□□□□□ -1.65
DDX56Q9NY93 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
DDX56Q9NY93 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.71□□□□□ -1.65
DDX56Q9NY93 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 GNG5P1-201ENST00000255500 204 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC021146.4-201ENST00000309229 279 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 MIR298-201ENST00000401212 88 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL121834.1-202ENST00000404494 277 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL663109.1-201ENST00000411498 844 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC137499.1-201ENST00000427602 88 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 MTCO3P5-201ENST00000433620 714 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 PTMAP6-201ENST00000439110 327 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC012671.1-201ENST00000451912 203 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 OR9M1P-201ENST00000459641 921 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 RPL7AP28-201ENST00000464513 571 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AL359273.1-201ENST00000510918 627 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC105914.1-201ENST00000511798 226 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC022447.1-201ENST00000515358 464 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC100770.1-201ENST00000532310 322 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 RPL23AP84-201ENST00000571193 464 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 HMGN1P30-201ENST00000589286 268 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC006116.10-201ENST00000591836 581 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 DUXAP4-201ENST00000603046 613 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC010201.1-201ENST00000605051 540 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC090425.2-201ENST00000608818 501 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 uc_338.12-201ENST00000616344 181 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC090510.2-201ENST00000617465 629 ntBASIC4.71□□□□□ -1.66
DDX56Q9NY93 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.71□□□□□ -1.66
DDX56Q9NY93 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DDX56Q9NY93 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 SDAD1P2-201ENST00000441308 2028 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 RNU5A-1-201ENST00000362698 116 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 SNORA23-201ENST00000365128 182 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 RPL23AP48-201ENST00000406913 488 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 RN7SKP159-201ENST00000410657 292 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 DLGAP5P1-201ENST00000430307 464 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 RPL21P89-201ENST00000444021 467 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 MTND1P12-201ENST00000455231 147 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 MTND1P3-201ENST00000484956 952 ntBASIC4.7□□□□□ -1.66
DDX56Q9NY93 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DDX56Q9NY93 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.7□□□□□ -1.66
DDX56Q9NY93 AC008638.1-201ENST00000506035 866 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 295.9 ms