Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NDUFS5P3-201ENST00000450668 321 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 CFTRP1-201ENST00000456646 183 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.98□□□□□ -1.93
USP54Q70EL1 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.98□□□□□ -1.93
USP54Q70EL1 AC026412.2-201ENST00000512270 1075 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC2.98□□□□□ -1.93
USP54Q70EL1 AC074029.1-201ENST00000552531 1044 ntBASIC2.98□□□□□ -1.93
USP54Q70EL1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.98□□□□□ -1.93
USP54Q70EL1 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC2.98□□□□□ -1.93
USP54Q70EL1 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP54Q70EL1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USP54Q70EL1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.97□□□□□ -1.93
USP54Q70EL1 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
USP54Q70EL1 U8.8-201ENST00000365399 135 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 RNA5SP88-201ENST00000365560 109 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 SNORA80E-201ENST00000384744 137 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.97□□□□□ -1.93
USP54Q70EL1 AL592045.1-201ENST00000429867 352 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 USP9YP7-201ENST00000436723 430 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.97□□□□□ -1.93
USP54Q70EL1 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.97□□□□□ -1.93
USP54Q70EL1 RPL7P52-201ENST00000449200 742 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 USP9YP32-201ENST00000452432 430 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 RN7SKP282-201ENST00000516824 299 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 RN7SKP219-201ENST00000516825 296 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC2.97□□□□□ -1.93
USP54Q70EL1 AC099778.2-201ENST00000610904 211 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.97□□□□□ -1.93
USP54Q70EL1 AC000123.2-201ENST00000623124 461 ntBASIC2.97□□□□□ -1.93
USP54Q70EL1 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 RN7SKP32-201ENST00000410167 303 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 AC098826.1-201ENST00000433943 471 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 MTND2P17-201ENST00000550281 688 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 AC135628.1-201ENST00000568867 534 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.96□□□□□ -1.94
USP54Q70EL1 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC2.96□□□□□ -1.94
USP54Q70EL1 AC104237.2-201ENST00000612456 443 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 VN1R9P-201ENST00000614184 867 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 PHKBP1-201ENST00000450951 1951 ntBASIC2.96□□□□□ -1.94
USP54Q70EL1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.96□□□□□ -1.94
USP54Q70EL1 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.96□□□□□ -1.94
USP54Q70EL1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.95□□□□□ -1.94
USP54Q70EL1 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.95□□□□□ -1.94
USP54Q70EL1 MIR6073-201ENST00000352083 89 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 RNU6-1159P-201ENST00000362933 107 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 MIR221-201ENST00000385135 110 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 SNORA48.3-201ENST00000391081 134 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 Y_RNA.595-201ENST00000410403 105 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 CLIC4P1-201ENST00000453177 535 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 RN7SKP210-201ENST00000459176 261 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 AC132942.1-201ENST00000486753 483 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC2.95□□□□□ -1.94
USP54Q70EL1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.95□□□□□ -1.94
USP54Q70EL1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
USP54Q70EL1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP54Q70EL1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC2.95□□□□□ -1.94
USP54Q70EL1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP54Q70EL1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP54Q70EL1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.95□□□□□ -1.94
USP54Q70EL1 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
USP54Q70EL1 DEFA7P-201ENST00000382676 285 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 SNORA17.3-201ENST00000391159 129 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.95□□□□□ -1.94
USP54Q70EL1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.95□□□□□ -1.94
USP54Q70EL1 AL121882.1-201ENST00000422893 417 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 AC022431.1-201ENST00000450941 438 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 AC116337.1-201ENST00000509680 687 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 RN7SKP31-201ENST00000516354 278 ntBASIC2.95□□□□□ -1.94
USP54Q70EL1 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.95□□□□□ -1.94
USP54Q70EL1 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.95□□□□□ -1.94
USP54Q70EL1 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.95□□□□□ -1.94
USP54Q70EL1 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
USP54Q70EL1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 AC009487.2-201ENST00000420969 6821 ntBASIC2.94□□□□□ -1.94
USP54Q70EL1 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 DHFRP5-201ENST00000406944 564 ntBASIC2.94□□□□□ -1.94
USP54Q70EL1 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.94□□□□□ -1.94
USP54Q70EL1 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.94□□□□□ -1.94
USP54Q70EL1 IFNWP4-201ENST00000453148 294 ntBASIC2.94□□□□□ -1.94
USP54Q70EL1 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 OR5D17P-201ENST00000531492 978 ntBASIC2.94□□□□□ -1.94
USP54Q70EL1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
USP54Q70EL1 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.93□□□□□ -1.94
USP54Q70EL1 Y_RNA.140-201ENST00000363474 103 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.93□□□□□ -1.94
USP54Q70EL1 RNU1-138P-201ENST00000384093 164 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 MTND4LP21-201ENST00000415303 295 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 AC007390.1-201ENST00000415722 356 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC2.93□□□□□ -1.94
USP54Q70EL1 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.93□□□□□ -1.94
USP54Q70EL1 AL353597.2-202ENST00000434901 373 ntBASIC2.93□□□□□ -1.94
USP54Q70EL1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms