Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SKP266-201ENST00000410232 287 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC096664.2-201ENST00000411843 406 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AMD1P2-201ENST00000412936 992 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 RPS29P4-201ENST00000414733 161 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 EIF1P3-201ENST00000423841 334 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AL691449.1-201ENST00000426570 421 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 PSMA6P3-201ENST00000428242 164 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AP000907.1-201ENST00000428428 510 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ISCA1P2-201ENST00000438679 421 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 MTND2P22-201ENST00000444325 1033 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 MTCO1P27-201ENST00000448269 226 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 OR6C5P-201ENST00000452388 923 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ARPC3P2-201ENST00000457786 533 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AP001486.1-201ENST00000463339 476 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 FAM172BP-201ENST00000487497 1089 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC010625.1-201ENST00000511296 403 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC068587.4-201ENST00000533893 186 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC107954.1-201ENST00000565906 727 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 MIR7844-201ENST00000616161 122 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AF246928.1-201ENST00000623768 87 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC004944.1-201ENST00000517807 3059 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 Y_RNA.493-201ENST00000384422 102 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 SNORD66.1-201ENST00000391230 76 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL122016.1-201ENST00000403365 367 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MTATP6P27-201ENST00000416987 621 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL590233.1-201ENST00000430017 456 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC005297.2-201ENST00000450430 606 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MTCO3P16-201ENST00000454456 754 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AP001992.1-205ENST00000462248 379 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 SETP11-201ENST00000473027 690 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MTND3P7-201ENST00000474435 343 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 RPS4XP15-201ENST00000489210 795 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC108145.1-201ENST00000503770 153 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC024589.1-201ENST00000512207 263 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 FTH1P9-201ENST00000513251 355 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MIR2114-201ENST00000516645 80 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL356057.1-201ENST00000533798 831 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 EEF1B2P4-201ENST00000551398 348 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL353997.4-201ENST00000586196 166 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC110760.3-201ENST00000598794 467 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 IGHV3-29-201ENST00000604817 344 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AL592436.1-201ENST00000605135 558 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC090186.1-201ENST00000605991 572 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 U3.45-201ENST00000607547 219 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC048344.4-201ENST00000619744 527 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 AC006927.3-201ENST00000638789 384 ntBASIC3.93□□□□□ -1.78
COL28A1Q2UY09 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL28A1Q2UY09 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL28A1Q2UY09 RNU6-989P-201ENST00000362756 107 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 RNU4-40P-201ENST00000364351 143 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 SNORD51-201ENST00000384320 80 ntBASIC3.92□□□□□ -1.78
COL28A1Q2UY09 MIR30B-201ENST00000384850 88 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms