Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC093156.1-201ENST00000440382 670 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC5.37□□□□□ -1.55
SF3A1Q15459 RPS11P1-201ENST00000451072 473 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.37□□□□□ -1.55
SF3A1Q15459 RPL9P6-201ENST00000492764 598 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 SCARNA22-201ENST00000503991 125 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC010460.1-201ENST00000507087 466 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 KLHL2P1-201ENST00000508691 521 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC004062.1-201ENST00000509926 645 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC091133.4-201ENST00000511142 308 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AC022483.1-201ENST00000514020 567 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 CCNG2P1-201ENST00000549521 1000 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AC012182.1-201ENST00000570133 895 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC209154.1-201ENST00000582156 337 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.37□□□□□ -1.55
SF3A1Q15459 BNIP3P33-201ENST00000598912 569 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AL022154.1-201ENST00000604698 785 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AL590282.1-201ENST00000610379 1136 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AL158209.2-201ENST00000619266 216 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC136475.10-201ENST00000620253 385 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC243312.2-201ENST00000623340 601 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC067931.1-201ENST00000624190 671 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 AL157700.1-201ENST00000561973 1432 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.37□□□□□ -1.55
SF3A1Q15459 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.37□□□□□ -1.55
SF3A1Q15459 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 MAPK10-286ENST00000641208 8747 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 RNA5SP167-201ENST00000365461 116 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 RPL7P60-201ENST00000397636 735 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AL109755.1-201ENST00000401791 649 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 RSU1P3-201ENST00000412878 835 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 USP9YP28-201ENST00000435142 589 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.36□□□□□ -1.55
SF3A1Q15459 C1DP4-201ENST00000455429 424 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 MTCO2P29-201ENST00000465212 189 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 RN7SL860P-201ENST00000473738 223 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 RPS15AP36-201ENST00000492022 382 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC078817.1-201ENST00000492623 435 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AC078918.1-201ENST00000498515 228 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC114967.1-201ENST00000504890 259 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 RNU6-506P-201ENST00000516553 94 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AP001922.4-201ENST00000526967 290 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC109635.4-202ENST00000531666 412 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 BNIP3P5-201ENST00000562290 498 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AL845331.3-202ENST00000562856 261 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.36□□□□□ -1.55
SF3A1Q15459 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SF3A1Q15459 AP000860.1-201ENST00000605250 559 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AC093838.1-201ENST00000613014 469 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AC087385.3-201ENST00000620477 187 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 AL136313.1-201ENST00000624804 202 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 OR5H6-203ENST00000642105 978 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.36□□□□□ -1.55
SF3A1Q15459 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.36□□□□□ -1.55
SF3A1Q15459 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.36□□□□□ -1.55
SF3A1Q15459 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
SF3A1Q15459 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 RNU4-1-201ENST00000363925 141 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 RNU6-173P-201ENST00000364215 104 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 SNORA7.2-201ENST00000364446 145 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 RNU6-754P-201ENST00000391166 107 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AL591848.1-201ENST00000413092 322 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 MTND3P17-201ENST00000416968 344 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms